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Primary Production

Primary Production

Primary Production is the production of organic compounds from carbon dioxide and sunlight, principally through the process of photosynthesis, forming the basis of the food web.

CMap

Algae are aquatic, photosynthetic plant-like organisms and include calcareous macroalgae, fleshy macroalgae, turf algae, and crustose coralline algae. Carbon storage and cycling is the ability of an ecosystem to utilize, process, and store carbon. Climate regulation is the process by which ecosystems process and store carbon, which can modulate atmospheric levels of carbon dioxide. Contact Uses, such as biological additions, physical damage, and biological harvesting, are activities in which humans create pressures through direct contact with the ecosystem. Cultural services are the nonmaterial benefits people obtain from ecosystems through spiritual enrichment, cognitive development, recreational opportunities, aesthetic experiences, sense of place, and educational and research opportunities. Discharges are the intentional or unintentional distribution of chemicals, debris, or other pollution, into the environment as a consequence of human activities. Ecosystem monitoring and restoration refers to responses to directly alter the condition of the reef ecosystem through restoration or remediation activities, setting limits on degradation through biological criteria or water quality criteria, or improving knowledge through monitoring, mapping, and scientific research. Ecosystem services are the benefits people obtain from ecosystems . Landscape Changes are alterations of the natural landscape through human activities, including coastal development, shoreline armoring, impervious surfaces, deforestation, or soil disturbance, which can alter water flow patterns and lead to pollutant runoff into coastal systems. Light is the level of visible and ultraviolet solar radiation that penetrates the water column. Mangroves are various kinds of trees up to medium height and shrubs that grow in saline coastal sediment habitats in the tropics and subtropics � mainly between latitudes 25� N and 25� S. Nutrients are essential elements needed by plants and animals for growth and primarily include nitrogen, phosphorous, and potassium, as well as minor nutrients such as calcium, magnesium, or zinc. The Reef Ecosystem includes a suite of abiotic variables that form the physical and chemical environment. Plankton are any plants or animals that are too small to actively move against ocean currents. Pressures are human activities that create stress on the environment. Primary Production is the production of organic compounds from carbon dioxide and sunlight, principally through the process of photosynthesis, forming the basis of the food web. Provisioning services are the products or ecosystem goods obtained from ecosystems, including seafood, genetic and biochemical resources, pharmaceuticals, ornamental resources, and water resources. The state of the Reef Ecosystem is the condition, in terms of quantity and quality, of the abiotic and biotic components including physical, chemical, and biological variables. Reef Habitat is the abundance, distribution, and condition of the benthic components of the reef ecosystem. Reef Inhabitants are all of the motile components of the reef ecosystem, including fish, invertebrates, marine reptiles and mammals, and are quantified by their abundance, distribution, and condition. Reef Life is the abundance, distribution, and condition of the biological components of the coral reef ecosystem. Regulating Services are benefits obtained from ecosystem processes that regulate the environment, including erosion regulation, natural hazard regulation, and climate regulation. Responses are actions taken by groups or individuals in society and government to prevent, compensate, ameliorate or adapt to changes in Ecosystem Services or their perceived value. Seagrasses are flowering plants that grow in marine, fully-saline environments. Socio-Economic Drivers include the sectors that fulfill human needs for Food & Raw Materials, Water, Shelter, Health, Culture, and Security, and the Infrastructure that supports the sectors. Supporting services are ecological processes that indirectly benefit humans by maintaining a functional ecosystem for the production of other ecosystem goods and services. Valuation is the process of estimating the worth, merit, or desirability of benefits derived from ecosystems. A wetland is an area of land whose soil is saturated with moisture either permanently or seasonally.

CMap Description

Algae and wetland plants, including seagrasses and mangroves, obtain nutrients through primary production. Stony coral also obtain nutrients through symbiotic algae called zooxanthellae. Primary production forms the foundation of the aquatic food web, providing complex habitat and resources for invertebrates and fish, which ultimately benefits humans through provision of goods, such as seafood, and recreational opportunities. Because photosynthesis converts atmospheric CO2 into biomass, primary production also contributes to climate regulation. Many of the same economic sectors that benefit from primary production also create pressures on the reef through harvesting, as well as contributing to coastal development and pollution. Decision-makers can better understand the value of reef primary productivity through valuation methods. Scientific monitoring and research can be used to better understand rates of primary production under various environmental conditions.

Citations

Citation Year Study Location Study Type Database Topics
Ahmad, SM; Padmakumari, VM; Raza, W; Venkatesham, K; Suseela, G; Sagar, N; Chamoli, A; Rajan, RS. 2011. High-resolution carbon and oxygen isotope records from a scleractinian (Porites) coral of Lakshadweep Archipelago. Quaternary International 238:107-114. 2011 US Pacific & Hawaii; India Climate; Primary Production; Stony Coral; Surface & Groundwater Flow
Al Balushi, SAK; Macquaker, JHS. 2011. Sedimentological evidence for bottom-water oxygenation during deposition of the Natih-B Member intrashelf-basinal sediments: Upper Cretaceous carbonate source rock, Natih Formation, North Sultanate of Oman. GeoArabia 16:47-84. 2011 Global; Oman Field Study & Monitoring; Model Echinoderms; Plankton; Primary Production; Sediment; Water Depth & Sea Level
Allison, N; Cohen, I; Finch, AA; Erez, J. 2011. Controls on Sr/Ca and Mg/Ca in scleractinian corals: The effects of Ca-ATPase and transcellular Ca channels on skeletal chemistry. Geochimica et Cosmochimica Acta 75:6350-6360. 2011 Calcium Carbonate Deposition; Primary Production; Stony Coral
Anthony, KRN; Kleypas, JA; Gattuso, JP. 2011. Coral reefs modify their seawater carbon chemistry - implications for impacts of ocean acidification. Global Change Biology 17:3655-3666. 2011 Australia Review; Model Algae; Calcium Carbonate Deposition; CO2; Ocean Acidity; Primary Production; Stony Coral; Surface & Groundwater Flow
Baker, DM; Kim, K; Andras, JP; Sparks, JP. 2011. Light-mediated (15)N fractionation in Caribbean gorgonian octocorals: implications for pollution monitoring. Coral Reefs 30:709-717. 2011 South & Central America; Florida; Caribbean Field Study & Monitoring; Lab Study Algae; Environmental Monitoring, Mapping, & Scientific Research; Nutrients; Octocoral; Primary Production; Stony Coral; Zooxanthellae
Bannister, RJ; Hoogenboom, MO; Anthony, KRN; Battershill, CN; Whalan, S; Webster, NS; de Nys, R. 2011. Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series 423:95-100. 2011 Australia Complex Habitat & Resources; Cyanobacteria; Light; Microorganisms; Nutrients; Primary Production; Sponges
Beaufort, L; Probert, I; de Garidel-Thoron, T; Bendif, EM; Ruiz-Pino, D; Metzl, N; Goyet, C; Buchet, N; Coupel, P; Grelaud, M; Rost, B; Rickaby, REM; de Vargas, C. 2011. Sensitivity of coccolithophores to carbonate chemistry and ocean acidification. Nature 476:80-83. 2011 CO2; Ocean Acidity; Plankton; Primary Production
Behrendt, L; Larkum, AWD; Norman, A; Qvortrup, K; Chen, M; Ralph, P; Sorensen, SJ; Trampe, E; Kuhl, M. 2011. Endolithic chlorophyll d-containing phototrophs. ISME Journal 5:1072-1076. 2011 Algae; Coralline Algae; Cyanobacteria; Docks & Marinas; Microorganisms; Primary Production
Bertucci, A; Innocenti, A; Scozzafava, A; Tambutte, S; Zoccola, D; Supuran, CT. 2011. Carbonic anhydrase inhibitors. Inhibition studies with anions and sulfonamides of a new cytosolic enzyme from the scleractinian coral Stylophora pistillata. Bioorganic & Medicinal Chemistry Letters 21:710-714. 2011 Primary Production; Stony Coral
Bertucci, A; Tambutte, S; Supuran, CT; Allemand, D; Zoccola, D. 2011. A New Coral Carbonic Anhydrase in Stylophora pistillata. Marine Biotechnology 13:992-1002. 2011 Anemones & Zooanthids; Calcium Carbonate Deposition; Primary Production; Special Use Permitting; Stony Coral
Brading, P; Warner, ME; Davey, P; Smith, DJ; Achterberg, EP; Suggett, DJ. 2011. Differential effects of ocean acidification on growth and photosynthesis among phylotypes of Symbiodinium (Dinophyceae). Limnology and Oceanography 56:927-938. 2011 Model CO2; Ocean Acidity; Plankton; Primary Production
Chauvin, A; Denis, V; Cuet, P. 2011. Is the response of coral calcification to seawater acidification related to nutrient loading? Coral Reefs 30:911-923. 2011 Indian Ocean; Cuba; India Calcium Carbonate Deposition; CO2; Discharges; Nutrients; Ocean Acidity; Primary Production; Stony Coral; Surface & Groundwater Flow; Zooxanthellae
Coma, R; Serrano, E; Linares, C; Ribes, M; Diaz, D; Ballesteros, E. 2011. Sea Urchins Predation Facilitates Coral Invasion in a Marine Reserve. PLoS One 6. 2011 Algae; Invasive Species; Primary Production; Sea Urchins; Surface & Groundwater Flow
Cooper, TF; Ulstrup, KE; Dandan, SS; Heyward, AJ; Kuhl, M; Muirhead, A; O'Leary, RA; Ziersen, BEF; Van Oppen, MJH. 2011. Niche specialization of reef-building corals in the mesophotic zone: metabolic trade-offs between divergent Symbiodinium types. Proceedings of the Royal Society B 278:1840-1850. 2011 Australia Climate; Primary Production; Stony Coral; Zooxanthellae
Cuet, P; Atkinson, MJ; Blanchot, J; Casareto, BE; Cordier, E; Falter, J; Frouin, P; Fujimura, H; Pierret, C; Susuki, Y; Tourrand, C. 2011. CNP budgets of a coral-dominated fringing reef at La Reunion, France: coupling of oceanic phosphate and groundwater nitrate. Coral Reefs 30:45-55. 2011 Australia; Reunion; France Nutrients; Plankton; Primary Production; Surface & Groundwater Flow
de Putron, SJ; McCorkle, DC; Cohen, AL; Dillon, AB. 2011. The impact of seawater saturation state and bicarbonate ion concentration on calcification by new recruits of two Atlantic corals. Coral Reefs 30:321-328. 2011 US East Coast (NC, SC, GA) Calcium Carbonate Deposition; CO2; Ocean Acidity; Primary Production; Stony Coral
del Hoyo, A; Alvarez, R; del Campo, EM; Gasulla, F; Barreno, E; Casano, LM. 2011. Oxidative stress induces distinct physiological responses in the two Trebouxia phycobionts of the lichen Ramalina farinacea. Annals of Botany 107:109-118. 2011 Algae; Primary Production
Eynaud, Y; Nisbet, RM; Muller, EB. 2011. Impact of excess and harmful radiation on energy budgets in scleractinian corals. Ecological Modelling 222:1315-1322. 2011 Model Light; Nutrients; Primary Production; Stony Coral
Falter, JL; Atkinson, MJ; Schar, DW; Lowe, RJ; Monismith, SG. 2011. Short-term coherency between gross primary production and community respiration in an algal-dominated reef flat. Coral Reefs 30:53-58. 2011 US Pacific & Hawaii CO2; Nutrients; Primary Production; Sediment
Faxneld, S., T. Lund J�rgensen, N. D. Nguyen, M. Nystr�m, and M. Tedengren. 2011. Differences in physiological response to increased seawater temperature in nearshore and offshore corals in northern Vietnam. Marine Environmental Research 71:225-233. 2011 Vietnam Primary Production; Sediment; Stony Coral
Faxneld, S; Jorgensen, TL; Nguyen, ND; Nystrom, M; Tedengren, M. 2011. Differences in physiological response to increased seawater temperature in nearshore and offshore corals in northern Vietnam. Marine Environmental Research 71:225-233. 2011 Vietnam Climate; Primary Production; Salinity; Sediment; Stony Coral
Fukuda, S; Suzuki, I; Hama, T; Shiraiwa, Y. 2011. Compensatory response of the unicellular-calcifying alga Emiliania huxleyi (Coccolithophoridales, Haptophyta) to ocean acidification. Journal of Oceanography 67:17-25. 2011 Cuba Algae; CO2; Ocean Acidity; Plankton; Primary Production; Special Use Permitting
Godinot, C; Houlbreque, F; Grover, R; Ferrier-Pages, C. 2011. Coral Uptake of Inorganic Phosphorus and Nitrogen Negatively Affected by Simultaneous Changes in Temperature and pH. PLoS One 6. 2011 Cuba Climate; CO2; Nutrients; Ocean Acidity; Primary Production; Stony Coral; Zooxanthellae
Gopinath, A; Muraleedharan, NS; Chandramohanakumar, N; Jayalakshmi, KV. 2011. Statistical Significance of BioMonitoring of Marine Algae for Trace Metal Levels in a Coral Environment. Environmental Forensics 12:98-105. 2011 Field Study & Monitoring; Index or Indicator Agriculture; Algae; Environmental Monitoring, Mapping, & Scientific Research; Primary Production
Haas, AF; Nelson, CE; Kelly, LW; Carlson, CA; Rohwer, F; Leichter, JJ; Wyatt, A; Smith, JE. 2011. Effects of Coral Reef Benthic Primary Producers on Dissolved Organic Carbon and Microbial Activity. PLoS One 6. 2011 Australia; Cuba Algae; Calcareous Macroalgae; Complex Habitat & Resources; Coralline Algae; Microorganisms; Nutrients; Pathogens; Plankton; Primary Production; Stony Coral; Turf Algae
Hurd, CL; Cornwall, CE; Currie, K; Hepburn, CD; McGraw, CM; Hunter, KA; Boyd, PW. 2011. Metabolically induced pH fluctuations by some coastal calcifiers exceed projected 22nd century ocean acidification: a mechanism for differential susceptibility? Global Change Biology 17:3254-3262. 2011 Global Algae; CO2; Coralline Algae; Ocean Acidity; Primary Production; Sea Urchins; Surface & Groundwater Flow
Inoue, M; Suwa, R; Suzuki, A; Sakai, K; Kawahata, H. 2011. Effects of seawater pH on growth and skeletal U/Ca ratios of Acropora digitifera coral polyps. Geophysical Research Letters 38. 2011 Calcium Carbonate Deposition; Ocean Acidity; Primary Production; Stony Coral
Jiang, ZP; Huang, JC; Dai, MH; Kao, SJ; Hydes, DJ; Chou, WC; Jan, S. 2011. Short-term dynamics of oxygen and carbon in productive nearshore shallow seawater systems off Taiwan: Observations and modeling. Limnology and Oceanography 56:1832-1849. 2011 Taiwan Model CO2; Primary Production; Surface & Groundwater Flow
Jokiel, PL. 2011. Ocean Acidification And Control Of Reef Coral Calcification By Boundary Layer Limitation Of Proton Flux. Bulletin of Marine Science 87:639-657. 2011 Calcium Carbonate Deposition; Climate; Ocean Acidity; Primary Production
Jokiel, PL. 2011. The reef coral two compartment proton flux model: A new approach relating tissue-level physiological processes to gross corallum morphology. Journal of Experimental Marine Biology and Ecology 409:1-12. 2011 Model Light; Ocean Acidity; Primary Production; Stony Coral; Zooxanthellae
Kemp, DW; Oakley, CA; Thornhill, DJ; Newcomb, LA; Schmidt, GW; Fitt, AK. 2011. Catastrophic mortality on inshore coral reefs of the Florida Keys due to severe low-temperature stress. Global Change Biology 17:3468-3477. 2011 Global; South & Central America; Florida; US Pacific & Hawaii; Caribbean Algae; Anemones & Zooanthids; Climate; Ocean Acidity; Primary Production; Stony Coral
Kjaer, KH; Ottosen, CO. 2011. Growth of Chrysanthemum in Response to Supplemental Light Provided by Irregular Light Breaks during the Night. Journal of the American Society for Horticultural Science 136:3-9. 2011 Climate; Light; Primary Production; Utility Policies
Kleypas, JA; Anthony, KRN; Gattuso, JP. 2011. Coral reefs modify their seawater carbon chemistry - case study from a barrier reef (Moorea, French Polynesia). Global Change Biology 17:3667-3678. 2011 Global Field Study & Monitoring; Model Algae; Calcium Carbonate Deposition; Climate; CO2; Ocean Acidity; Primary Production; Surface & Groundwater Flow
Kolasinski, J; Rogers, K; Cuet, P; Barry, B; Frouin, P. 2011. Sources of particulate organic matter at the ecosystem scale: a stable isotope and trace element study in a tropical coral reef. Marine Ecology Progress Series 443:77-93. 2011 Reunion; India Discharges; Nutrients; Plankton; Primary Production; Sediment; Surface & Groundwater Flow
Koreny, L; Sobotka, R; Janouskovec, J; Keeling, PJ; Obornik, M. 2011. Tetrapyrrole Synthesis of Photosynthetic Chromerids Is Likely Homologous to the Unusual Pathway of Apicomplexan Parasites. Plant Cell 23:3454-3462. 2011 GIS & Maps Cyanobacteria; Microorganisms; Primary Production
Larkum, AWD; Salih, A; Kuhl, M. 2011. Rapid Mass Movement of Chloroplasts during Segment Formation of the Calcifying Siphonalean Green Alga, Halimeda macroloba. PLoS One 6. 2011 Calcareous Macroalgae; Calcium Carbonate Deposition; Primary Production; Sediment
Negri, AP; Flores, F; Rothig, T; Uthicke, S. 2011. Herbicides increase the vulnerability of corals to rising sea surface temperature. Limnology and Oceanography 56:471-485. 2011 Global Model Agriculture; Algae; Chemical Use Regulations; Climate; Coralline Algae; Fertilizer & Pesticide Use; Ocean Acidity; Primary Production; Stony Coral; Zooxanthellae
O'Gorman, EJ; Yearsley, JM; Crowe, TP; Emmerson, MC; Jacob, U; Petchey, OL. 2011. Loss of functionally unique species may gradually undermine ecosystems. Proceedings of the Royal Society B 278:1886-1893. 2011 Primary Production
Perry, RI. 2011. Potential impacts of climate change on marine wild capture fisheries: an update. Journal of Agricultural Science 149:63-75. 2011 Global; US Pacific & Hawaii; US East Coast (NC, SC, GA) Model Climate; Finfish Harvest; Fishing Sector; Ocean Acidity; Plankton; Primary Production; Special Use Permitting
Price, NN; Hamilton, SL; Tootell, JS; Smith, JE. 2011. Species-specific consequences of ocean acidification for the calcareous tropical green algae Halimeda. Marine Ecology Progress Series 440:67-78. 2011 Florida; US Pacific & Hawaii; Palmyra Atoll Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; Climate; CO2; Ocean Acidity; Primary Production; Sediment; Surface & Groundwater Flow
Rasher, DB; Stout, EP; Engel, S; Kubanek, J; Hay, ME. 2011. Macroalgal terpenes function as allelopathic agents against reef corals. Proceedings of the National Academy of Sciences of the United States of America 108:17726-17731. 2011 Global Field Study & Monitoring Algae; Climate; Primary Production; Small Herbivorous Fish; Stony Coral
Reymond, CE; Uthicke, S; Pandolfi, JM. 2011. Inhibited growth in the photosymbiont-bearing foraminifer Marginopora vertebralis from the nearshore Great Barrier Reef, Australia. Marine Ecology Progress Series 435:97-U117. 2011 Australia Field Study & Monitoring; Lab Study Climate; Discharges; Non-point Source Runoff; Nutrients; Primary Production; Surface & Groundwater Flow
Ries, JB. 2011. A physicochemical framework for interpreting the biological calcification response to CO(2)-induced ocean acidification. Geochimica et Cosmochimica Acta 75:4053-4064. 2011 Model Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; Ocean Acidity; Primary Production; Stony Coral
Rodolfo-Metalpa, R; Houlbreque, F; Tambutte, E; Boisson, F; Baggini, C; Patti, FP; Jeffree, R; Fine, M; Foggo, A; Gattuso, JP; Hall-Spencer, JM. 2011. Coral and mollusc resistance to ocean acidification adversely affected by warming. Nature Climate Change 1:308-312. 2011 Global Field Study & Monitoring; Lab Study CO2; Molluscs; Ocean Acidity; Primary Production; Surface & Groundwater Flow
Rollion-Bard, C; Blamart, D; Trebosc, J; Tricot, G; Mussi, A; Cuif, JP. 2011. Boron isotopes as pH proxy: A new look at boron speciation in deep-sea corals using (11)B MAS NMR and EELS. Geochimica et Cosmochimica Acta 75:1003-1012. 2011 Field Study & Monitoring Primary Production
Sawall, Y; Teichberg, MC; Seemann, J; Litaay, M; Jompa, J; Richter, C. 2011. Nutritional status and metabolism of the coral Stylophora subseriata along a eutrophication gradient in Spermonde Archipelago (Indonesia). Coral Reefs 30:841-853. 2011 Cuba; Indonesia Nutrients; Primary Production; Stony Coral; Zooxanthellae
Schottner, S; Pfitzner, B; Grunke, S; Rasheed, M; Wild, C; Ramette, A. 2011. Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea. Environmental Microbiology 13:1815-1826. 2011 Nutrients; Primary Production; Sediment; Surface & Groundwater Flow
Schutter, M; Kranenbarg, S; Wijffels, RH; Verreth, J; Osinga, R. 2011. Modification of light utilization for skeletal growth by water flow in the scleractinian coral Galaxea fascicularis. Marine Biology 158:769-777. 2011 Cuba Light; Primary Production; Seawater Flow; Stony Coral
Shamberger, KEF; Feely, RA; Sabine, CL; Atkinson, MJ; DeCarlo, EH; Mackenzie, FT; Drupp, PS; Butterfield, DA. 2011. Calcification and organic production on a Hawaiian coral reef. Marine Chemistry 127:64-75. 2011 US Pacific & Hawaii Model Calcium Carbonate Deposition; CO2; Ocean Acidity; Primary Production; Stony Coral
Shefferson, RP; McCormick, MK; Whigham, DF; O'Neill, JP. 2011. Life history strategy in herbaceous perennials: inferring demographic patterns from the aboveground dynamics of a primarily subterranean, myco-heterotrophic orchid. Oikos 120:1291-1300. 2011 Field Study & Monitoring; Model Environmental Monitoring, Mapping, & Scientific Research; Primary Production
Sinutok, S; Hill, R; Doblin, MA; Wuhrer, R; Ralph, PJ. 2011. Warmer more acidic conditions cause decreased productivity and calcification in subtropical coral reef sediment-dwelling calcifiers. Limnology and Oceanography 56:1200-1212. 2011 Algae; Calcareous Macroalgae; Climate; CO2; Ocean Acidity; Primary Production; Sediment; Stony Coral
Sjoo, GL; Mork, E; Andersson, S; Melander, I. 2011. Differences in top-down and bottom-up regulation of macroalgal communities between a reef crest and back reef habitat in Zanzibar. Estuarine Coastal and Shelf Science 91:511-518. 2011 South & Central America; Tanzania; Caribbean Algae; Complex Habitat & Resources; Nutrients; Primary Production; Special Use Permitting
Storlazzi, CD; Elias, E; Field, ME; Presto, MK. 2011. Numerical modeling of the impact of sea-level rise on fringing coral reef hydrodynamics and sediment transport. Coral Reefs 30:83-96. 2011 US Pacific & Hawaii Model Climate; Light; Primary Production; Sediment; Shoreline Protection; Water Depth & Sea Level
Tanaka, Y; Miyajima, T; Watanabe, A; Nadaoka, K; Yamamoto, T; Ogawa, H. 2011. Distribution of dissolved organic carbon and nitrogen in a coral reef. Coral Reefs 30:533-541. 2011 Nutrients; Plankton; Primary Production; Seagrasses; Stony Coral
Tolosa, I; Treignier, C; Grover, R; Ferrier-Pages, C. 2011. Impact of feeding and short-term temperature stress on the content and isotopic signature of fatty acids, sterols, and alcohols in the scleractinian coral Turbinaria reniformis. Coral Reefs 30:763-774. 2011 Algae; Primary Production; Stony Coral; Zooxanthellae
Tremblay, P; Peirano, A; Ferrier-Pages, C. 2011. Heterotrophy in the Mediterranean symbiotic coral Cladocora caespitosa: comparison with two other scleractinian species. Marine Ecology Progress Series 422:165-177. 2011 Plankton; Primary Production; Stony Coral; Zooxanthellae
Tseng, LC; Dahms, HU; Hsu, NJ; Hwang, JS. 2011. Effects of sedimentation on the gorgonian Subergorgia suberosa (Pallas, 1766). Marine Biology 158:1301-1310. 2011 Australia Lab Study; Model; Index or Indicator Octocoral; Primary Production; Sediment; Stony Coral
Ulstrup, KE; Kuhl, M; van Oppen, MJH; Cooper, TF; Ralph, PJ. 2011. Variation in photosynthesis and respiration in geographically distinct populations of two reef-building coral species. Aquatic Biology 12:241-248. 2011 Australia Algae; Climate; Primary Production; Special Use Permitting; Stony Coral; Zooxanthellae
Venn, A; Tambutte, E; Holcomb, M; Allemand, D; Tambutte, S. 2011. Live Tissue Imaging Shows Reef Corals Elevate pH under Their Calcifying Tissue Relative to Seawater. PLoS One 6. 2011 Model Calcium Carbonate Deposition; Ocean Acidity; Primary Production; Stony Coral
Wagner, D; Pochon, X; Irwin, L; Toonen, RJ; Gates, RD. 2011. Azooxanthellate? Most Hawaiian black corals contain Symbiodinium. Proceedings of the Royal Society B 278:1323-1328. 2011 US Pacific & Hawaii; Johnston Atoll Primary Production; Stony Coral; Zooxanthellae
Walker, RA; Hallock, P; Torres, JJ; Vargo, GA. 2011. Photosynthesis And Respiration In Five Species Of Benthic Foraminifera That Host Algal Endosymbionts. Journal of Foraminiferal Research 41:314-325. 2011 Florida; US Pacific & Hawaii Light; Primary Production
Yamazaki, A; Watanabe, T; Ogawa, NO; Ohkouchi, N; Shirai, K; Toratani, M; Uematsu, M. 2011. Seasonal variations in the nitrogen isotope composition of Okinotori coral in the tropical western Pacific: A new proxy for marine nitrate dynamics. Journal Of Geophysical Research-biogeosciences 116. 2011 US Pacific & Hawaii; Japan Decision Support Frameworks & Tools Nutrients; Primary Production; Stony Coral; Storms & Hurricanes; Zooxanthellae
Yang, WF; Huang, YP; Chen, M; Qiu, YS; Li, HB; Zhang, L. 2011. Unusually high (210)Po activities in the surface water of the Zhubi Coral Reef Lagoon in the South China Sea. Science of the Total Environment 409:4612-4617. 2011 US Pacific & Hawaii; China Model Nutrients; Primary Production; Sediment; Surface & Groundwater Flow
Zhu, BH; Pan, KH; Wang, GC. 2011. Effects of host starvation on the symbiotic dinoflagellates from the sea anemone Stichodactyla mertensii. Marine Ecology-an Evolutionary Perspective 32:15-23. 2011 Index or Indicator Anemones & Zooanthids; Nutrients; Primary Production; Stony Coral; Zooxanthellae
A. V. Borges and N. Gypens. 2010. Carbonate chemistry in the coastal zone responds more strongly to eutrophication than to ocean acidification. Limnology and Oceanography 55:346-353. 2010 Model Carbon Storage & Cycling; CO2; Nutrients; Ocean Acidity; Primary Production; Special Use Permitting; Surface & Groundwater Flow
Allison, N. and A. A. Finch. 2010. delta B-11, Sr, Mg and B in a modern Porites coral: the relationship between calcification site pH and skeletal chemistry. Geochimica et Cosmochimica Acta 74:1790-1800. 2010 US Pacific & Hawaii Model; Index or Indicator Primary Production; Stony Coral
Bertucci, A., E. Tambutte, S. Tambutte, D. Allemand, and D. Zoccola. 2010. Symbiosis-dependent gene expression in coral-dinoflagellate association: cloning and characterization of a P-type H+-ATPase gene. Proceedings of the Royal Society B 277:87-95. 2010 Primary Production; Zooxanthellae
Bielmyera, G. K., M. Grosell, R. Bhagooli, A. C. Baker, C. Langdon, P. Gillette, and T.R. Capo. 2010. Differential effects of copper on three species of scleractinian corals and their algal symbionts (Symbiodinium spp.). Aquatic Toxicology 97:125-133. 2010 Lab Study Primary Production; Stony Coral; Zooxanthellae
Bourgeois, S., S. Hochard, and O. Pringault. 2010. Subtidal microphytobenthos: effects of inorganic and organic compound supplies on migration, production, and respiration in a tropical coastal environment. Aquatic Microbial Ecology 61:13-29. 2010 New Caledonia Nutrients; Primary Production; Sediment
Cebrian, E. 2010. Grazing on coral reefs facilitates growth of the excavating sponge Cliona orientalis (Clionaidae, Hadromerida). Marine Ecology-an Evolutionary Perspective 31:533-538. 2010 Australia Algae; Boring Sponges; Corallivorous Fish; Fish; Large Herbivorous Fish; Primary Production; Sponges; Substrate; Zooxanthellae
Charpy, L., K. A. Palinska, B. Casareto, M. J. Langlade, Y. Suzuki, R. M. M. Abed, and S. Golubic. 2010. Dinitrogen-Fixing Cyanobacteria in Microbial Mats of Two Shallow Coral Reef Ecosystems. Microbial Ecology 59:174-186. 2010 US Pacific & Hawaii; Indian Ocean; Reunion; India; Pacific Ocean Decision Support Frameworks & Tools Cyanobacteria; Microorganisms; Nutrients; Primary Production
Cheng, Y. R. and C. F. Dai. 2010. Endosymbiotic copepods may feed on zooxanthellae from their coral host, Pocillopora damicornis. Coral Reefs 29:13-18. 2010 Taiwan Algae; Primary Production; Stony Coral; Zooxanthellae
Colombo-Pallotta, M. F., A. Rodriguez-Roman, and R. Iglesias-Prieto. 2010. Calcification in bleached and unbleached Montastraea faveolata: evaluating the role of oxygen and glycerol. Coral Reefs 29:899-907. 2010 South & Central America; Cuba; Caribbean Lab Study Calcium Carbonate Deposition; Primary Production; Stony Coral
Crabbe, M. J. C. 2010. Computational Biology Approaches to Plant Metabolism and Photosynthesis: Applications for Corals in Times of Climate Change and Environmental Stress. Journal of Integrative Plant Biology 52:698-703. 2010 Review Climate; Primary Production; Zooxanthellae
Crawley, A., D. I. Kline, S. Dunn, K. Anthony, and S. Dove. 2010. The effect of ocean acidification on symbiont photorespiration and productivity in Acropora formosa. Global Change Biology 16:851-863. 2010 CO2; Light; Ocean Acidity; Primary Production; Stony Coral
Csaszar, N. B. M., P. J. Ralph, R. Frankham, R. Berkelmans, and M. J. H. van Oppen. 2010. Estimating the Potential for Adaptation of Corals to Climate Warming. PLoS One 5:e9751. 2010 US Pacific & Hawaii Climate; Primary Production; Stony Coral
Edmunds, P. J. and H. S. Lenihan. 2010. Effect of sub-lethal damage to juvenile colonies of massive Porites spp. under contrasting regimes of temperature and water flow. Marine Biology 157:887-897. 2010 Cuba Corallivorous Fish; Primary Production; Seawater Flow; Stony Coral
Faxneld, S., T. L. Jorgensen, and M. Tedengren. 2010. Effects of elevated water temperature, reduced salinity and nutrient enrichment on the metabolism of the coral Turbinaria mesenterina. Estuarine Coastal and Shelf Science 88:482-487. 2010 Vietnam Climate; Nutrients; Primary Production; Salinity
Ferrier-Pages, C., C. Rottier, E. Beraud, and O. Levy. 2010. Experimental assessment of the feeding effort of three scleractinian coral species during a thermal stress: Effect on the rates of photosynthesis. Journal of Experimental Marine Biology and Ecology 390:118-124. 2010 Primary Production; Stony Coral; Zooxanthellae
Gaither, M. R. and R. Rowan. 2010. Zooxanthellar symbiosis in planula larvae of the coral Pocillopora damicornis. Journal of Experimental Marine Biology and Ecology 386:45-53. 2010 Primary Production; Stony Coral; Zooxanthellae
Garland, K. F., S. E. Burnett, L. B. Stack, and D. L. Zhang. 2010. Minimum Daily Light Integral for Growing High-quality Coleus. HortTechnology 20:929-933. 2010 Light; Primary Production
Green, D. H., P. J. Edmunds, X. Pochon, and R. D. Gates. 2010. The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin Islands. Journal of Experimental Marine Biology and Ecology 384:18-29. 2010 US Virgin Islands Primary Production; Stony Coral
Grenz, C., L. Denis, O. Pringault, and R. Fichez. 2010. Spatial and seasonal variability of sediment oxygen consumption and nutrient fluxes at the sediment water interface in a sub-tropical lagoon (New Caledonia). Marine Pollution Bulletin 61:399-412. 2010 US Pacific & Hawaii; Cuba; Pacific Ocean; New Caledonia Nutrients; Primary Production; Sediment
Hallegraeff, G. M. 2010. Ocean Climate Change, Phytoplankton Community Responses, And Harmful Algal Blooms: A Formidable Predictive Challenge. Journal of Phycology 46:220-235. 2010 Global; US East Coast (NC, SC, GA) Field Study & Monitoring; Lab Study Algae; Climate; CO2; Fish; Non-point Source Runoff; Nutrients; Ocean Acidity; Plankton; Primary Production; Small Herbivorous Fish; Storms & Hurricanes; Surface & Groundwater Flow
Harii, S., M. Yamamoto, and O. Hoegh-Guldberg. 2010. The relative contribution of dinoflagellate photosynthesis and stored lipids to the survivorship of symbiotic larvae of the reef-building corals. Marine Biology 157:1215-1224. 2010 Primary Production; Stony Coral
Hartmann, A. C., J. E. Carilli, R. D. Norris, C. D. Charles, and D. D. Deheyn. 2010. Stable isotopic records of bleaching and endolithic algae blooms in the skeleton of the boulder forming coral Montastraea faveolata. Coral Reefs 29:1079-1089. 2010 Algae; Primary Production; Stony Coral
Heindel, K., D. Birgel, J. Peckmann, H. Kuhnert, and H. Westphal. 2010. Formation Of Deglacial Microbialites In Coral Reefs Off Tahiti (Iodp 310) Involving Sulfate-Reducing Bacteria. Palaios 25:618-635. 2010 Algae; Coralline Algae; Cyanobacteria; Microorganisms; Nutrients; Primary Production; Water Depth & Sea Level
Hennige, S. J., D. J. Smith, S. J. Walsh, M. P. McGinley, M. E. Warner, and D. J. Suggett. 2010. Acclimation and adaptation of scleractinian coral communities along environmental gradients within an Indonesian reef system. Journal of Experimental Marine Biology and Ecology 391:143-152. 2010 Indonesia Climate; Primary Production; Stony Coral
Hill, R. W., C. Li, A. D. Jones, J. P. Gunn, and P. R. Frade. 2010. Abundant betaines in reef-building corals and ecological indicators of a photoprotective role. Coral Reefs 29:869-880. 2010 Field Study & Monitoring; Index or Indicator Algae; Light; Primary Production; Stony Coral
Hoogenboom, M., E. Beraud, and C. Ferrier-Pages. 2010. Relationship between symbiont density and photosynthetic carbon acquisition in the temperate coral Cladocora caespitosa. Coral Reefs 29:21-29. 2010 Field Study & Monitoring; Lab Study; Model Primary Production; Stony Coral
Hoogenboom, M., R. Rodolfo-Metalpa, and C. Ferrier-Pages. 2010. Co-variation between autotrophy and heterotrophy in the Mediterranean coral Cladocora caespitosa. Journal of Experimental Biology 213:2399-2409. 2010 Cuba Nutrients; Primary Production; Special Use Permitting; Stony Coral
Jantzen, C., C. Wild, M. Rasheed, M. El-Zibdah, and C. Richter. 2010. Enhanced pore-water nutrient fluxes by the upside-down jellyfish Cassiopea sp in a Red Sea coral reef. Marine Ecology Progress Series 411:117-U162. 2010 Nutrients; Primary Production; Sediment; Zooxanthellae
Juranek, L. W. and P. D. Quay. 2010. Basin-wide photosynthetic production rates in the subtropical and tropical Pacific Ocean determined from dissolved oxygen isotope ratio measurements. Global Biogeochemical Cycles 24:GB2006. 2010 US Pacific & Hawaii; Australia; Pacific Ocean Field Study & Monitoring; Model Primary Production
Kim, S., K. K. Hammerstom, K. E. Conlan, and A. R. Thurber. 2010. Polar Ecosystem Dynamics: Recovery of Communities from Organic Enrichment in McMurdo Sound, Antarctica. Integrative And Comparative Biology 50:1031-1040. 2010 Primary Production; Whales & Dolphins
Kroeker, K. J., R. L. Kordas, R. N. Crim, and G. G. Singh. 2010. Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms. Ecology Letters 13:1419-1434. 2010 Calcium Carbonate Deposition; Climate; CO2; Ocean Acidity; Primary Production
Kuguru, B., Y. Achituv, D. F. Gruber, and D. Tchernov. 2010. Photoacclimation mechanisms of corallimorpharians on coral reefs: Photosynthetic parameters of zooxanthellae and host cellular responses to variation in irradiance. Journal of Experimental Marine Biology and Ecology 394:53-62. 2010 Light; Primary Production; Zooxanthellae
LaVigne, M., K. A. Matthews, A. G. Grottoli, K. M. Cobb, E. Anagnostou, G. Cabioch, and R. M. Sherrell. 2010. Coral skeleton P/Ca proxy for seawater phosphate: Multi-colony calibration with a contemporaneous seawater phosphate record. Geochimica et Cosmochimica Acta 74:1282-1293. 2010 Panama Nutrients; Primary Production; Stony Coral; Surface & Groundwater Flow
Lilley, R. M., P. J. Ralph, and A. W. D. Larkum. 2010. The determination of activity of the enzyme Rubisco in cell extracts of the dinoflagellate alga Symbiodinium sp by manganese chemiluminescence and its response to short-term thermal stress of the alga. Plant Cell And Environment 33:995-1004. 2010 Invertebrates; Microorganisms; Primary Production
MacNeil, M. A., N. A. J. Graham, J. E. Cinner, N. K. Dulvy, P. A. Loring, S. Jennings, N. V. C. Polunin, A. T. Fisk, and T. R. McClanahan. 2010. Transitional states in marine fisheries: adapting to predicted global change. Philosophical Transactions of the Royal Society B: Biological Sciences 365:3753-3763. 2010 Global; Indian Ocean; India Climate; Finfish Harvest; Fish; Fishing Sector; Primary Production
Magnusson, M., K. Heimann, P. Quayle, and A. P. Negri. 2010. Additive toxicity of herbicide mixtures and comparative sensitivity of tropical benthic microalgae. Marine Pollution Bulletin 60:1978-1987. 2010 Australia Algae; Fertilizer & Pesticide Use; Primary Production
Maier, C., M. G. Weinbauer, and J. Patzold. 2010. Stable isotopes reveal limitations in C and N assimilation in the Caribbean reef corals Madracis auretenra, M. carmabi and M. formosa. Marine Ecology Progress Series 412:103-112. 2010 South & Central America; Caribbean Light; Nutrients; Primary Production; Stony Coral; Water Depth & Sea Level; Zooxanthellae
Mass, T., A. Genin, U. Shavit, M. Grinstein, and D. Tchernov. 2010. Flow enhances photosynthesis in marine benthic autotrophs by increasing the efflux of oxygen from the organism to the water. Proceedings of the National Academy of Sciences of the United States of America 107:2527-2531. 2010 Algae; CO2; Nutrients; Primary Production; Seagrasses; Stony Coral
Mass, T., D. I. Kline, M. Roopin, C. J. Veal, S. Cohen, D. Iluz, and O. Levy. 2010. The spectral quality of light is a key driver of photosynthesis and photoadaptation in Stylophora pistillata colonies from different depths in the Red Sea. Journal of Experimental Biology 213:4084-4091. 2010 Algae; Light; Primary Production; Surface & Groundwater Flow; Zooxanthellae
Murali, M. R., S. B. Raja, and S. N. Devaraj. 2010. Neutralization of radical toxicity by temperature-dependent modulation of extracellular SOD activity in coral bleaching pathogen Vibrio shiloi and its role as a virulence factor. Archives of Microbiology 192:619-623. 2010 Algae; Microorganisms; Pathogens; Primary Production; Zooxanthellae
Ogston, A. S. and M. E. Field. 2010. Predictions of Turbidity Due to Enhanced Sediment Resuspension Resulting from Sea-Level Rise on a Fringing Coral Reef: Evidence from Molokai, Hawaii. Journal of Coastal Research 26:1027-1037. 2010 Global; US Pacific & Hawaii Climate; Light; Primary Production; Sediment; Shoreline Protection; Water Depth & Sea Level
Ogston, A. S. and M. E. Field. 2010. Predictions of turbidity due to enhanced sediment resuspension resulting from sea-level rise on f Fringing coral reef: evidence from Molokai, Hawaii. Journal of Coastal Research 26:1027-1037. 2010 Global; US Pacific & Hawaii Climate; Light; Primary Production; Sediment; Shoreline Protection; Water Depth & Sea Level
Ramirez-Llodra, E., A. Brandt, R. Danovaro, B. De Mol, E. Escobar, C. R. German, L. A. Levin, P. M. Arbizu, L. Menot, P. Buhl-Mortensen, B. E. Narayanaswamy, C. R. Smith, D. P. Tittensor, P. A. Tyler, A. Vanreusel, and M. Vecchione. 2010. Deep, diverse and definitely different: unique attributes of the world's largest ecosystem. Biogeosciences 7:2851-2899. 2010 Global Review Finfish Harvest; Microorganisms; Primary Production
Ries, J. B. 2010. Review: geological and experimental evidence for secular variation in seawater Mg/Ca (calcite-aragonite seas) and its effects on marine biological calcification. Biogeosciences 7:2795-2849. 2010 Global Review; Lab Study Algae; Calcium Carbonate Deposition; CO2; Echinoderms; Marine Worms; Microorganisms; Ocean Acidity; Primary Production; Sediment
Roder, C., L. Fillinger, C. Jantzen, G. M. Schmidt, S. Khokiattiwong, and C. Richter. 2010. Trophic response of corals to large amplitude internal waves. Marine Ecology Progress Series 412:113-128. 2010 Thailand Primary Production; Stony Coral
Rodolfo-Metalpa, R., S. Martin, C. Ferrier-Pages, and J. P. Gattuso. 2010. Response of the temperate coral Cladocora caespitosa to mid- and long-term exposure to pCO(2) and temperature levels projected for the year 2100 AD. Biogeosciences 7:289-300. 2010 Calcium Carbonate Deposition; CO2; Ocean Acidity; Primary Production
Schoon, R., A. Bissett, and D. de Beer. 2010. Resilience of pore-water chemistry and calcification in photosynthetic zones of calcifying sediments. Limnology and Oceanography 55:377-385. 2010 Australia Lab Study Primary Production; Sediment
Schutter, M., J. Crocker, A. Paijmans, M. Janse, R. Osinga, A. J. Verreth, and R. H. Wijffels. 2010. The effect of different flow regimes on the growth and metabolic rates of the scleractinian coral Galaxea fascicularis. Coral Reefs DOI10.1007/s00338-010-0617-2. 2010 Algae; Cyanobacteria; Microorganisms; Nutrients; Primary Production; Seawater Flow; Stony Coral
Sorokin, Y. I. and P. Y. Sorokin. 2010. Plankton of the central Great Barrier Reef: abundance, production and trophodynamic roles. Journal of the Marine Biological Association of the United Kingdom 90:1173-1187. 2010 Australia Algae; Mangroves; Nutrients; Plankton; Primary Production; Substrate
Springer, Y. P., C. G. Hays, M. H. Carr, and M. R. Mackey. 2010. Toward Ecosystem-Based Management Of Marine Macroalgae-The Bull Kelp, Nereocystis Luetkeana. Pages 1-41 Oceanography And Marine Biology: An Annual Review, Vol 48. 2010 Review Algae; Primary Production
Stanley, S. M., J. B. Ries, and L. A. Hardie. 2010. Increased Production Of Calcite And Slower Growth For The Major Sediment-Producing Alga Halimeda As The Mg/Ca Ratio Of Seawater Is Lowered To A "Calcite Sea" Level. Journal of Sedimentary Research 80:6-16. 2010 Lab Study Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; CO2; Primary Production; Sediment
Tait, L. W. and D. R. Schiel. 2010. Primary productivity of intertidal macroalgal assemblages: comparison of laboratory and in situ photorespirometry. Marine Ecology Progress Series 416:115-125. 2010 Field Study & Monitoring; Lab Study Algae; Light; Primary Production; Sediment
Titlyanov, E. A., S. I. Kiyashko, T. V. Titlyanova, and J. A. Raven. 2010. delta C-13 and delta N-15 in tissue of coral polyps and epilithic algae inhabiting damaged coral colonies under the influence of different light intensities. Aquatic Ecology 44:13-21. 2010 Algae; Light; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Torreton, J. P., E. Rochelle-Newall, O. Pringault, S. Jacquet, V. Faure, and E. Briand. 2010. Variability of primary and bacterial production in a coral reef lagoon (New Caledonia). Marine Pollution Bulletin 61:335-348. 2010 US Pacific & Hawaii; Pacific Ocean; New Caledonia Microorganisms; Nutrients; Plankton; Primary Production
Unsworth, R. K. F., S. De Grave, and L. Y. D. Goulding. 2010. Influence Of Environmental Cycles Upon A Seagrass Caridean Shrimp Assemblage. Raffles Bulletin of Zoology 58:349-355. 2010 US Pacific & Hawaii; Indonesia Lobster, Crab, & Shrimp; Primary Production; Seagrasses
van Doorn, W. G. and K. Yoshimoto. 2010. Role of chloroplasts and other plastids in ageing and death of plants and animals: A tale of Vishnu and Shiva. Ageing Research Reviews 9:117-130. 2010 Algae; Food, Beverage, & Tobacco Products; Primary Production; Sponges; Stony Coral
Yost, D. M., R. J. Jones, and C. L. Mitchelmore. 2010. Alterations in dimethylsulfoniopropionate (DMSP) levels in the coral Montastraea franksi in response to copper exposure. Aquatic Toxicology 98:367-373. 2010 Index or Indicator Algae; Primary Production; Stony Coral
Becker, E. L., E. E. Cordes, S. A. Macko, and C. R. Fisher. 2009. Importance of seep primary production to Lophelia pertusa and associated fauna in the Gulf of Mexico. Deep-Sea Research Part I: Oceanographic Research Papers 56:786-800. 2009 South & Central America; Mexico Lobster, Crab, & Shrimp; Marine Worms; Nutrients; Primary Production; Snails & Conch
Brandano, M., V. Frezza, L. Tomassetti, and M. Cuffaro. 2009. Heterozoan carbonates in oligotrophic tropical waters: The Attard member of the lower coralline limestone formation (Upper Oligocene, Malta). Palaeogeography, Palaeoclimatology, Palaeoecology 274:54-63. 2009 Non-point Source Runoff; Nutrients; Primary Production; Sediment
Buxton, L., M. Badger, and P. Ralph. 2009. Effects Of Moderate Heat Stress And Dissolved Inorganic Carbon Concentration On Photosynthesis And Respiration Of Symbiodinium Sp (Dinophyceae) In Culture And In Symbiosis. Journal of Phycology 45:357-365. 2009 Model CO2; Primary Production; Zooxanthellae
Buxton, L., M. Badger, and P. Ralph. 2009. Effects of moderate heat stress and dissolved inorganic carbon concentration on photosynthesis and respiration of symbiodinium sp. (dinophyceae) in culture and in symbiosis. Journal of Phycology 45:357-365. 2009 Model CO2; Primary Production; Zooxanthellae
Copertino, M. S., A. Cheshire, and T. Kildea. 2009. Photophysiology of a turf algal community: Integrated responses to ambient light and standing biomass. Journal of Phycology 45:324-336. 2009 Australia Primary Production; Substrate; Turf Algae
Einbinder, S., T. Mass, E. Brokovich, Z. Dubinsky, J. Erez, and D. Tchernov. 2009. Changes in morphology and diet of the coral Stylophora pistillata along a depth gradient. Marine Ecology Progress Series 381:167-174. 2009 Field Study & Monitoring Algae; Carbon Storage & Cycling; Nutrients; Plankton; Primary Production; Zooxanthellae
Ferrier-Pages, C., E. Tambutte, T. Zamoum, N. Segonds, P. L. Merle, N. Bensoussan, D. Allemand, J. Garrabou, and S. Tambutte. 2009. Physiological response of the symbiotic gorgonian Eunicella singularis to a long-term temperature increase. Journal of Experimental Biology 212:3007-3015. 2009 Global Lab Study Climate; Octocoral; Primary Production
Figueroa, F. L., B. Martinez, A. Israel, A. Neori, E. J. Malta, P. Ang, S. Inken, R. Marquardt, T. Rachamim, U. Arazi, S. Frenk, and N. Korbee. 2009. Acclimation of Red Sea macroalgae to solar radiation: photosynthesis and thallus absorptance. Aquatic Biology 7:159-172. 2009 Cuba Field Study & Monitoring Algae; Fleshy Macroalgae; Light; Nutrients; Primary Production
Goffredo, S., E. Caroselli, G. Mattioli, E. Pignotti, Z. Dubinsky, and F. Zaccanti. 2009. Inferred level of calcification decreases along an increasing temperature gradient in a Mediterranean endemic coral. Limnology and Oceanography 54:930-937. 2009 Field Study & Monitoring Algae; Calcium Carbonate Deposition; Climate; Light; Primary Production
Granek, E. F., J. E. Compton, and D. L. Phillips. 2009. Mangrove-exported nutrient incorporation by sessile coral reef invertebrates. Ecosystems 12:462-472. 2009 Panama Model Algae; Bivalves; Mangroves; Marine Worms; Molluscs; Nutrients; Plankton; Primary Production; Seagrasses; Sponges; Stony Coral; Tunicates
Guenette, S. and R. L. Hill. 2009. A trophic model of the coral reef ecosystem of La Parguera, Puerto Rico: synthesizing fisheries and ecological data. Caribbean Journal of Science 45:317-337. 2009 South & Central America; Puerto Rico; Caribbean Model Corallivorous Fish; Finfish Harvest; Fish; Fishing Sector; Large Herbivorous Fish; Primary Production
Hanelt, D. and M. Y. Roleda. 2009. UVB radiation may ameliorate photoinhibition in specific shallow-water tropical marine macrophytes. Aquatic Botany 91:12-Jun. 2009 South & Central America; Belize; Caribbean Algae; Calcareous Macroalgae; Fleshy Macroalgae; Light; Primary Production; Seagrasses
Higuchi, T., H. Fujimura, H. Ikota, T. Arakaki, and T. Oomori. 2009. The effects of hydrogen peroxide on metabolism in the coral Goniastrea aspera. Journal of Experimental Marine Biology and Ecology 370:48-55. 2009 Cuba Primary Production; Stony Coral
Higuchi, T., H. Fujimura, T. Arakaki, and T. Oomori. 2009. The synergistic effects of hydrogen peroxide and elevated seawater temperature on the metabolic activity of the coral Galaxea fascicularis. Marine Biology 156:589-596. 2009 Cuba Primary Production
Hoogenboom, M. O. and S. R. Connolly. 2009. Defining fundamental niche dimensions of corals: Synergistic effects of colony size, light, and flow. Ecology 90:767-780. 2009 Field Study & Monitoring; Lab Study; Model Light; Primary Production; Seawater Flow; Stony Coral
Hoogenboom, M. O., S. R. Connolly, and K. R. N. Anthony. 2009. Effects of photoacclimation on the light niche of corals: a process-based approach. Marine Biology 156:2493-2503. 2009 Light; Primary Production; Stony Coral
Houlbreque, F. and C. Ferrier-Pages. 2009. Heterotrophy in tropical scleractinian corals. Biological Review 84:17-Jan. 2009 Review Algae; Microorganisms; Nutrients; Plankton; Primary Production; Stony Coral; Zooxanthellae
Houlbreque, F. and C. Ferrier-Pages. 2009. Heterotrophy in Tropical Scleractinian Corals. Biological Reviews 84:1-17. 2009 Review Algae; Microorganisms; Nutrients; Plankton; Primary Production; Stony Coral; Zooxanthellae
Khalesi, M. K., H. H. Beeftink, and R. H. Wijffels. 2009. Light-dependency of growth and secondary metabolite production in the captive zooxanthellate soft coral sinularia flexibilis. Marine Biotechnology 11:488-494. 2009 Algae; Light; Octocoral; Pharmaceuticals & Cosmetics; Pharmaceuticals & Cosmetics Sources; Primary Production; Zooxanthellae
Kramarsky-Winter, E., C. A. Downs, A. Downs, and Y. Loya. 2009. Cellular responses in the coral Stylophora pistillata exposed to eutrophication from fish mariculture. Evolutionary Ecology Research 11:381-401. 2009 Egypt Decision Support Frameworks & Tools Aquaculture; Fish; Nutrients; Primary Production; Stony Coral
Lasram, F. B., F. Guilhaumon, and D. Mouillot. 2009. Fish diversity patterns in the Mediterranean Sea: deviations from a mid-domain model. Marine Ecology Progress Series 376:253-267. 2009 Model; GIS & Maps Climate; Fish; Primary Production; Surface & Groundwater Flow
Lee, T.-C. and B.-D. Hsu. 2009. Disintegration of the cells of siphonous green alga codium edule (bryopsidales, chlorophyta) under mild heat stress. Journal of Phycology 45:348-356. 2009 Cuba; Taiwan Field Study & Monitoring Algae; Primary Production
Levin, L. A., G. F. Mendoza, T. Konotchick, and R. Lee. 2009. Macrobenthos community structure and trophic relationships within active and inactive Pacific hydrothermal sediments. Deep-Sea Research Part II: Topical Studies in Oceanography 56:1632-1648. 2009 US Pacific & Hawaii; Pacific Ocean; Papua New Guinea Field Study & Monitoring Bivalves; Invertebrates; Marine Worms; Primary Production; Sediment
Lirman, D. and D. Manzello. 2009. Patterns of resistance and resilience of the stress-tolerant coral Siderastrea radians (Pallas) to sub-optimal salinity and sediment burial. Journal of Experimental Marine Biology and Ecology 369:72-77. 2009 Florida Primary Production; Salinity; Sediment; Stony Coral
Luz, B. and E. Barkan. 2009. Net and gross oxygen production from O-2/Ar, O-17/O-16 and O-18/O-16 ratios. Aquatic Microbial Ecology 56:133-145. 2009 US East Coast (NC, SC, GA); Atlantic Ocean; Cuba; Bermuda Field Study & Monitoring; Lab Study Primary Production
Miller, R. J., D. C. Reed, and M. A. Brzezinski. 2009. Community structure and productivity of subtidal turf and foliose algal assemblages. Marine Ecology Progress Series 388:1-11. 2009 Algae; Invertebrates; Primary Production; Turf Algae
Millero, F. J., R. Woosley, B. Ditrolio, and J. Waters. 2009. Effect of ocean acidification on the speciation of metals in seawater. Oceanography 22:72-85. 2009 Review CO2; Nutrients; Ocean Acidity; Primary Production
Mortillaro, J. M., K. A. Pitt, S. Y. Lee, and T. Meziane. 2009. Light intensity influences the production and translocation of fatty acids by zooxanthellae in the jellyfish Cassiopea sp. Journal of Experimental Marine Biology and Ecology 378:22-30. 2009 Australia Light; Lobster, Crab, & Shrimp; Plankton; Primary Production; Zooxanthellae
Myers, J. L. and L. L. Richardson. 2009. Adaptation of cyanobacteria to the sulfide-rich microenvironment of black band disease of coral. FEMS Microbiology Ecology 67:242-251. 2009 Global; Europe Cyanobacteria; Microorganisms; Pathogens; Primary Production
Nakamura, T. and T. Nakamori. 2009. Estimation of photosynthesis and calcification rates at a fringing reef by accounting for diurnal variations and the zonation of coral reef communities on reef flat and slope: A case study for the Shiraho reef, Ishigaki Island, southwest Japan. Coral Reefs 28:229-250. 2009 Cuba; Japan CO2; Primary Production; Stony Coral; Water Depth & Sea Level
Olbers, J. M., L. Celliers, and M. H. Schleyer. 2009. Zonation of benthic communities on the subtropical Aliwal Shoal, Durban, KwaZulu-Natal, South Africa. African Zoology 44:8-23. 2009 Cuba; South Africa Algae; Marine Protected Areas; Marine Worms; Octocoral; Primary Production; Sediment; Shoreline Protection; Sponges; Stony Coral
Omann, I., A. Stocker, and J. Jager. 2009. Climate change as a threat to biodiversity: an application of the DPSIR approach. Ecological Economics 69:24-31. 2009 Global Decision Support Frameworks & Tools Climate; Greenhouse Gas Emissions; Mitigation; Primary Production; Water Depth & Sea Level
Oxford Economics. 2009. Valuing the effects of Great Barrier Reef bleaching. 2009 Global; Australia Review Climate; CO2; Marine Protected Areas; Monetary Valuation; Nutrients; Pathogens; Primary Production; Sea Temperatures; Stony Coral; Tourism & Recreation; Valuation
Richardson, L. L., A. W. Miller, E. Broderick, L. Kaczmarsky, M. Gantar, D. Stanic, and R. Sekar. 2009. Sulfide, microcystin, and the etiology of black band disease. Diseases of Aquatic Organisms 87:79-90. 2009 Model Cyanobacteria; Microorganisms; Pathogens; Primary Production
Ries, J. B. 2009. Effects of secular variation in seawater Mg/Ca ratio (calcite-aragonite seas) on CaCO3 sediment production by the calcareous algae Halimeda, Penicillus and Udotea- evidence from recent experiments and the geological record. Terra Nova 21:323-339. 2009 Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; CO2; Primary Production; Sediment
Ries, J. B., A. L. Cohn, and D. C. McCorkle. 2009. Marine calcifiers exhibit mixed responses to CO2-induced ocean acidification. Geology 37:1131-1134. 2009 Lab Study Calcium Carbonate Deposition; CO2; Ocean Acidity; Primary Production
Sauchyn, L. K. and R. E. Scheibling. 2009. Degradation of sea urchin feces in a rocky subtidal ecosystem: implications for nutrient cycling and energy flow. Aquatic Biology 6:99-108. 2009 US East Coast (NC, SC, GA) Invertebrates; Nutrients; Primary Production; Sea Urchins
Schneider, K., O. Levy, Z. Dubinsky, and J. Erez. 2009. In situ diel cycles of photosynthesis and calcification in hermatypic corals. Limnology and Oceanography 54:1995-2002. 2009 Cuba Algae; Light; Plankton; Primary Production; Stony Coral
Semesi, I. S., J. Kangwe, and M. Bjork. 2009. Alterations in seawater pH and CO2 affect calcification and photosynthesis in the tropical coralline alga, Hydrolithon sp (Rhodophyta). Estuarine Coastal and Shelf Science 84:337-341. 2009 Indian Ocean; India Algae; Calcium Carbonate Deposition; CO2; Coralline Algae; Ocean Acidity; Primary Production; Seagrasses
Shaw, M., A. Negri, K. Fabricius, and J. F. Mueller. 2009. Predicting water toxicity: Pairing passive sampling with bioassays on the Great Barrier Reef. Aquatic Toxicology 95:108-116. 2009 Australia Decision Support Frameworks & Tools Agriculture; Fertilizer & Pesticide Use; Microorganisms; Primary Production; Sea Urchins; Stony Coral
Sheikh, M. A., T. Higuchi, H. Fujimura, T. S. Imo, T. Miyagi, and T. Oomori. 2009. Contamination and impacts of new antifouling biocide Irgarol-1051 on subtropical coral reef waters. International Journal of Environmental Science and Technology 6:353-358. 2009 Japan Fishing Sector; Primary Production
Sisma-Ventura, G., B. Guzner, R. Yam, M. Fine, and A. Shemesh. 2009. The reef builder gastropod Dendropoma petreaum - A proxy of short and long term climatic events in the Eastern Mediterranean. Geochimica et Cosmochimica Acta 73:4376-4383. 2009 Global; US East Coast (NC, SC, GA) Calcium Carbonate Deposition; CO2; Nutrients; Primary Production; Surface & Groundwater Flow
Tice, M. M. 2009. Environmental Controls on Photosynthetic Microbial Mat Distribution and Morphogenesis on a 3.42 Ga Clastic-Starved Platform. Astrobiology 9:989-1000. 2009 Primary Production; Sediment; Storms & Hurricanes; Utility Policies
Titlyanov, E. A., S. I. Kiyashko, T. V. Titlyanova, and J. A. Raven. 2009. δ13C and δ15N in tissue of coral polyps and epilithic algae inhabiting damaged coral colonies under the influence of different light intensities. Aquatic Ecology 9-Jan. 2009 Algae; Light; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Todd, P. A., J. H. Lee, and L. M. Chou. 2009. Polymorphism and crypsis in the boring giant clam (Tridacna crocea): potential strategies against visual predators. Hydrobiologia 635:37-43. 2009 US Pacific & Hawaii; Malaysia; Oman Bivalves; Primary Production; Skeletal Coral; Substrate; Zooxanthellae
Treignier, C., I. Tolosa, R. Grover, S. Reynaud, and C. Ferrier-Pages. 2009. Carbon isotope composition of fatty acids and sterols in the scleractinian coral Turbinaria reniformis: Effect of light and feeding. Limnology and Oceanography 54:1933-1940. 2009 Light; Plankton; Primary Production; Stony Coral; Zooxanthellae
Venn, A. A., E. Tambutte, S. Lotto, D. Zoccola, D. Allemand, and S. Tambutte. 2009. Imaging intracellular pH in a reef coral and symbiotic anemone. Proceedings of the National Academy of Sciences of the United States of America 106:16574-16579. 2009 Global; Cuba Model; GIS & Maps Algae; Anemones & Zooanthids; Climate; Primary Production
Voolstra, C. R., S. Sunagawa, J. A. Schwarz, M. A. Coffroth, D. Yellowlees, W. Leggat, and M. Medina. 2009. Evolutionary analysis of orthologous cDNA sequences from cultured and symbiotic dinoflagellate symbionts of reef-building corals (Dinophyceae: Symbiodinium). Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics 4:67-74. 2009 Primary Production; Stony Coral; Zooxanthellae
Bell, J. J. 2008. The functional roles of marine sponges. Estuarine Coastal and Shelf Science 79:341-353. 2008 Review; Field Study & Monitoring; Decision Support Frameworks & Tools Biological Monitoring, Mapping, & Scientific Research; Carbon Storage & Cycling; Nutrients; Primary Production; Sponges; Substrate
Borell, E. M., A. R. Yuliantri, K. Bischof, and C. Richter. 2008. The effect of heterotrophy on photosynthesis and tissue composition of two scleractinian corals under elevated temperature. Journal of Experimental Marine Biology and Ecology 364:116-123. 2008 Plankton; Primary Production; Stony Coral; Zooxanthellae
Bruschetti, M., T. Luppi, E. Fanjul, A. Rosenthal, and O. Iribarne. 2008. Grazing effect of the invasive reef-forming polychaete Ficopomatus enigmaticus (Fauvel) on phytoplankton biomass in a SW Atlantic coastal lagoon. Journal of Experimental Marine Biology and Ecology 354:212-219. 2008 US East Coast (NC, SC, GA) Invasive Species; Marine Worms; Nutrients; Plankton; Primary Production; Seawater Flow
Burns, K. A., G. Brunskill, D. Brinkman, and I. Zagorskis. 2008. Organic carbon and nutrient fluxes to the coastal zone from the Sepik River outflow. Continental Shelf Research 28:283-301. 2008 Papua New Guinea Carbon Storage & Cycling; Discharges; Nutrients; Primary Production; Sediment; Surface & Groundwater Flow
Caras, T., A. Bachar, and Z. Pasternak. 2008. Morphological variation in the oral disc of the scleractinian coral Favia speciosa (Dana) at Indonesia. Computational Biology and Chemistry 32:345-348. 2008 Indonesia Primary Production; Sediment; Stony Coral
Cherbadgy, I. I. and L. N. Propp. 2008. Photosynthesis and respiration of a deep-water periphyton community (Macclesfield Bank, South China Sea). Russian Journal of Marine Biology 34:301-308. 2008 China Field Study & Monitoring Algae; Calcareous Macroalgae; Coralline Algae; Light; Microorganisms; Molluscs; Primary Production; Skeletal Coral; Sponges; Substrate
Clavier, J., L. Chauvaud, P. Cuet, C. Esbelin, P. Frouin, D. Taddei, and G. Thouzeau. 2008. Diel variation of benthic respiration in a coral reef sediment (Reunion Island, Indian Ocean). Estuarine Coastal and Shelf Science 76:369-377. 2008 Indian Ocean; Reunion; India CO2; Primary Production; Sediment
De Paiva, A. C. G., P. D. T. D. C. Chaves, and M. E. De Araujo. 2008. Trophic organization and structure of shallow water ichthyofauna in a tropical estuary [Estrutura e organizacão trofica da ictiofauna de aguas rasas em um estuario tropical]. Revista Brasileira de Zoologia 25:647-661. 2008 Fish; Mangroves; Plankton; Primary Production; Sediment; Surface & Groundwater Flow
Dimond, J. and E. Carrington. 2008. Symbiosis regulation in a facultatively symbiotic temperate coral: Zooxanthellae division and expulsion. Coral Reefs 27:601-604. 2008 England Index or Indicator Primary Production; Special Use Permitting; Stony Coral; Zooxanthellae
Dong, J., Y. Zhang, Y. Wang, S. Zhang, and H. Wang. 2008. Spatial and seasonal variations of cyanobacteria and their nitrogen fixation rates in Sanya Bay, South China Sea. Scientia Marina 72:239-251. 2008 China Cyanobacteria; Microorganisms; Nutrients; Plankton; Primary Production; Salinity; Sediment
Dove, S. G., C. Lovell, M. Fine, J. Deckenback, O. Hoegh-Guldberg, R. Iglesias-Prieto, and K. R. N. Anthony. 2008. Host pigments: Potential facilitators of photosynthesis in coral symbioses. Plant, Cell and Environment 31:1523-1533. 2008 Light; Primary Production; Stony Coral
Dupouy, C., A. Minghelli-Roman, M. Despinoy, R. Rottgers, J. Neveux, C. Pinazo, and M. Petit. 2008. MODIS/Aqua chlorophyll monitoring of the New Caledonia lagoon during the 2008 La Nina event. Proceedings of SPIE - The International Society for Optical Engineering 7150:715014. 2008 US Pacific & Hawaii; Pacific Ocean; New Caledonia Field Study & Monitoring; Model Climate; Plankton; Primary Production
Erwin, P. M. and R. W. Thacker. 2008. Phototrophic nutrition and symbiont diversity of two Caribbean sponge-cyanobacteria symbioses. Marine Ecology Progress Series 362:139-147. 2008 South & Central America; US Pacific & Hawaii; Caribbean Field Study & Monitoring Cyanobacteria; Light; Microorganisms; Primary Production; Sponges
Foubert, A., D. Depreiter, T. Beck, L. Maignien, B. Pannemans, N. Frank, D. Blamart, and J.-P. Henriet. 2008. Carbonate mounds in a mud volcano province off north-west Morocco: Key to processes and controls. Marine Geology 248:74-96. 2008 Field Study & Monitoring; Model Calcium Carbonate Deposition; Plankton; Primary Production; Sediment; Stony Coral; Substrate; Water Depth & Sea Level
Freire, K. M. F., V. Christensen, and D. Pauly. 2008. Description of the East Brazil Large Marine Ecosystem using a trophic model. Scientia Marina 72:477-491. 2008 US East Coast (NC, SC, GA) Model Algae; Apex Fish Predators; Finfish Harvest; Fish; Fisheries & Hunting Policies; Fishing & Harvesting Management; Fishing Sector; Lobster, Crab, & Shrimp; Plankton; Primary Production; Seagrasses; Whales & Dolphins
Fujimura, H., T. Higuchi, K. Shiroma, T. Arakaki, A. M. Hamdun, Y. Nakano, and T. Oomori. 2008. Continuous-flow complete-mixing system for assessing the effects of environmental factors on colony-level coral metabolism. Journal of Biochemical and Biophysical Methods 70:865-872. 2008 Primary Production; Stony Coral
Fujita, K. and H. Fujimura. 2008. Organic and inorganic carbon production by algal symbiont-bearing foraminifera on northwest Pacific coral-reef flats. Journal of Foraminiferal Research 38:117-126. 2008 US Pacific & Hawaii; Cuba; Pacific Ocean Ports & Harbors; Primary Production
Gibson. T., H. Wanless, J. Klaus, P. Foster-Turley, K. Florini, T. Olson. 2008. Corals and Climate Change: Florida�s Natural Treasures at Risk. Environmental Defense Fund. 2008 Global; Florida Climate; CO2; Commercial Fisheries; Finfish Harvest; Fishing Sector; Greenhouse Gas Emissions; Natural Gas & Electric Power; Nutrients; Pathogens; Primary Production; Recreational Fishing; Sea Temperatures; Sediment; Skeletal Coral; Storms & Hurricanes; Tourism & Recreation; Water Depth & Sea Level
Gruner, D. S., J. E. Smith, E. W. Seabloom, S. A. Sandin, J. T. Ngai, H. Hillebrand, W. S. Harpole, J. J. Elser, E. E. Cleland, M. E. S. Bracken, E. T. Borer, and B. M. Bolker. 2008. A cross-system synthesis of consumer and nutrient resource control on producer biomass. Ecology Letters 11:740-755. 2008 Review; Model Invertebrates; Nutrients; Primary Production
Hajkowicz, S. A. 2008. Supporting multi-stakeholder environmental decisions. Journal of Environmental Management 88:607-614. 2008 Australia Model; Decision Support Frameworks & Tools Decision Support; Primary Production
Herfort, L., B. Thake, and I. Taubner. 2008. Bicarbonate stimulation of calcification and photosynthesis in two hermatypic corals. Journal of Phycology 44:91-98. 2008 US Pacific & Hawaii Primary Production; Stony Coral
Hoch, MA TT HE W. P., K. S. Dillon, R. B. Coffin, and L. A. Cifuentes. 2008. Sensitivity of bacterioplankton nitrogen metabolism to eutrophication in sub-tropical coastal waters of Key West, Florida. Marine Pollution Bulletin 56:913-926. 2008 Florida Index or Indicator Microorganisms; Nutrients; Plankton; Primary Production
Hochberg, E. J. and M. J. Atkinson. 2008. Coral reef benthic productivity based on optical absorptance and light-use efficiency. Coral Reefs 27:49-59. 2008 Model; Remote Sensing Light; Primary Production
Hoogenboom, M. O., S. R. Connolly, and K. R. N. Anthony. 2008. Interactions between morphological and physiological plasticity optimize energy acquisition in corals. Ecology 89:1144-1154. 2008 Model Primary Production; Stony Coral
Iglesias-Rodriguez, M. D., P. R. Halloran, R. E. M. Rickaby, I. R. Hall, E. Colmenero-Hidalgo, J. R. Gittins, D. R. H. Green, T. Tyrrell, S. J. Gibbs, P. Von Dassow, E. Rehm, E. V. Armbrust, and K. P. Boessenkool. 2008. Phytoplankton calcification in a high-CO2 world. Science 320:336-340. 2008 Field Study & Monitoring; Lab Study; Model Calcium Carbonate Deposition; Climate; CO2; Ocean Acidity; Plankton; Primary Production
Jantzen, C., C. Wild, M. El-Zibdah, H. A. Roa-Quiaoit, C. Haacke, and C. Richter. 2008. Photosynthetic performance of giant clams, Tridacna maxima and T. squamosa, Red Sea. Marine Biology 155:211-221. 2008 Cuba; Egypt Dive, Snorkeling, & Swimming Tourism; Light; Primary Production; Zooxanthellae
Kaniewska, P., K. R. N. Anthony, and O. Hoegh-Guldberg. 2008. Variation in colony geometry modulates internal light levels in branching corals, Acropora humilis and Stylophora pistillata. Marine Biology 155:649-660. 2008 Australia Light; Primary Production; Special Use Permitting; Stony Coral
Kuhl, M. and L. Polerecky. 2008. Functional and structural imaging of phototrophic microbial communities and symbioses. Aquatic Microbial Ecology 53:99-118. 2008 GIS & Maps CO2; Environmental Monitoring, Mapping, & Scientific Research; Primary Production; Sediment
Leichter, J. J., M. D. Stokes, and S. J. Genovese. 2008. Deep water macroalgal communities adjacent to the Florida Keys reef tract. Marine Ecology Progress Series 356:123-138. 2008 Florida; Cuba Algae; Light; Nutrients; Primary Production
Magnusson, M., K. Heimann, and A. P. Negri. 2008. Comparative effects of herbicides on photosynthesis and growth of tropical estuarine microalgae. Marine Pollution Bulletin 56:1545-1552. 2008 Australia Algae; Fertilizer & Pesticide Use; Primary Production
Margolin, C. L. 2008. Use of the coral-sel technique in the study of small scale water flow environments on coral growth. Pages 479-483 in Proceedings of the 11th International Coral Reef Symposium. 2008 Primary Production; Seawater Flow; Stony Coral; Zooxanthellae
Marubini, F., C. Ferrier-Pages, P. Furla, and D. Allemand. 2008. Coral calcification responds to seawater acidification: A working hypothesis towards a physiological mechanism. Coral Reefs 27:491-499. 2008 Cuba Calcium Carbonate Deposition; CO2; Primary Production; Stony Coral; Substrate
Marynowski, L., P. Filipiak, and A. Pisarzowska. 2008. Organic geochemistry and palynofacies of the Early-Middle Frasnian transition (Late Devonian) of the Holy Cross Mountains, Southern Poland. Palaeogeography, Palaeoclimatology, Palaeoecology 269:152-165. 2008 Poland Nutrients; Primary Production; Sediment
Mass, T. and A. Genin. 2008. Environmental versus intrinsic determination of colony symmetry in the coral Pocillopora verrucosa. Marine Ecology Progress Series 369:131-137. 2008 Primary Production; Stony Coral; Zooxanthellae
Moya, A., S. Tambutte, A. Bertucci, E. Tambutte, S. Lotto, D. Vullo, C. T. Supuran, D. Allemand, and D. Zoccola. 2008. Carbonic anhydrase in the scleractinian coral Stylophora pistillata: Characterization, localization, and role in biomineralization. Journal of Biological Chemistry 283:25475-25484. 2008 Primary Production; Special Use Permitting; Stony Coral
Nakamura, T. and H. Yamasaki. 2008. Flicker light effects on photosynthesis of symbiotic algae in the reef-building coral Acropora digitifera (Cnidaria: Anthozoa: Scleractinia). Pacific Science 62:341-350. 2008 Algae; Complex Habitat & Resources; Light; Primary Production; Stony Coral
Omata, T., A. Suzuki, T. Sato, K. Minoshima, E. Nomaru, A. Murakami, S. Murayama, H. Kawahata, and T. Maruyama. 2008. Effect of photosynthetic light dosage on carbon isotope composition in the coral skeleton: Long-term culture of Porites spp. Journal of Geophysical Research G: Biogeosciences 113. 2008 Algae; Light; Primary Production; Stony Coral
Piniak, G. A. and C. D. Storlazzi. 2008. Diurnal variability in turbidity and coral fluorescence on a fringing reef flat: Southern Molokai, Hawaii. Estuarine Coastal and Shelf Science 77:56-64. 2008 US Pacific & Hawaii Model Light; Primary Production; Sediment
Pinkerton, M. H., C. J. Lundquist, C. A. J. Duffy, and D. J. Freeman. 2008. Trophic modelling of a New Zealand rocky reef ecosystem using simultaneous adjustment of diet, biomass and energetic parameters. Journal of Experimental Marine Biology and Ecology 367:189-203. 2008 Model Algae; Invertebrates; Lobster, Crab, & Shrimp; Microorganisms; Plankton; Primary Production; Sediment; Sponges
Polerecky, L., C. Lott, and M. Weber. 2008. In situ measurement of gross photosynthesis using a microsensor-based light-shade shift method. Limnology and Oceanography: Methods 6:373-383. 2008 Field Study & Monitoring; Model Primary Production
Pomar, L. and P. Hallock. 2008. Carbonate factories: A conundrum in sedimentary geology. Earth-Science Reviews 87:134-169. 2008 Global Model Algae; Climate; CO2; Microorganisms; Nutrients; Plankton; Primary Production; Sediment; Sponges; Surface & Groundwater Flow
Riegel, W. 2008. The Late Palaeozoic phytoplankton blackout - Artefact or evidence of global change? Review of Palaeobotany and Palynology 148:73-90. 2008 Global Climate; Nutrients; Plankton; Primary Production
Riul, P., C. H. Targino, J. D. N. Farias, P. T. Visscher, and P. A. Horta. 2008. Decrease in Lithothamnion sp. (Rhodophyta) primary production due to the deposition of a thin sediment layer. Journal of the Marine Biological Association of the United Kingdom 88:17-19. 2008 Oman; United Kingdom Agriculture; Algae; Calcium Carbonate Deposition; Coralline Algae; Dredging, Draining, & Filling; Light; Primary Production; Sediment
Rochelle-Newall, E. J., J.-P. Torreton, X. Mari, and O. Pringault. 2008. Phytoplankton-bacterioplankton coupling in a subtropical South Pacific coral reef lagoon. Aquatic Microbial Ecology 50:221-229. 2008 US Pacific & Hawaii; Australia; Cuba; New Caledonia Carbon Storage & Cycling; Microorganisms; Nutrients; Plankton; Primary Production
Rodolfo-Metalpa, R., Y. Huot, and C. Ferrier-Pages. 2008. Photosynthetic response of the Mediterranean zooxanthellate coral Cladocora caespitosa to the natural range of light and temperature. Journal of Experimental Biology 211:1579-1586. 2008 Light; Primary Production; Zooxanthellae
Roopin, M., R. P. Henry, and N. E. Chadwick. 2008. Nutrient transfer in a marine mutualism: Patterns of ammonia excretion by anemonefish and uptake by giant sea anemones. Marine Biology 154:547-556. 2008 Cuba Field Study & Monitoring; Lab Study; Model Anemones & Zooanthids; Fish; Nutrients; Planktivorous Fish; Plankton; Primary Production; Zooxanthellae
Rosa, R., H. M. Dierssen, L. Gonzalez, and B. A. Seibel. 2008. Ecological biogeography of cephalopod molluscs in the Atlantic Ocean: Historical and contemporary causes of coastal diversity patterns. Global Ecology and Biogeography 17:600-610. 2008 South & Central America; US East Coast (NC, SC, GA); Atlantic Ocean Model Climate; Complex Habitat & Resources; Molluscs; Octopus & Squid; Primary Production
Schonberg, C. H. L., R. Suwa, M. Hidaka, and W. K. W. Loh. 2008. Sponge and coral zooxanthellae in heat and light: Preliminary results of photochemical efficiency monitored with pulse amplitude modulated fluorometry. Marine Ecology 29:247-258. 2008 Boring Sponges; Climate; Primary Production; Sponges; Stony Coral; Zooxanthellae
Schutter, M., B. van Velthoven, M. Janse, R. Osinga, M. Janssen, R. Wijffels, and J. Verreth. 2008. The effect of irradiance on long-term skeletal growth and net photosynthesis in Galaxea fascicularis under four light conditions. Journal of Experimental Marine Biology and Ecology 367:75-80. 2008 Light; Primary Production; Stony Coral
Shaw, C. M., P. K. S. Lam, and J. F. Mueller. 2008. Photosystem II herbicide pollution in Hong Kong and its potential photosynthetic effects on corals. Marine Pollution Bulletin 57:473-478. 2008 Fertilizer & Pesticide Use; Primary Production; Zooxanthellae
Shaw, E. C., A. J. Gabric, and G. H. McTainsh. 2008. Impacts of aeolian dust deposition on phytoplankton dynamics in Queensland coastal waters. Marine and Freshwater Research 59:951-962. 2008 Australia Model Cyanobacteria; Microorganisms; Nutrients; Plankton; Primary Production; Storms & Hurricanes
Stambler, N., O. Levy, and L. Vaki. 2008. Photosynthesis and respiration of hermatypic zooxanthellate Red Sea corals from 5-75-m depth. Israel Journal of Plant Sciences 56:45-53. 2008 Primary Production; Stony Coral; Zooxanthellae
Suggett, D. J., M. E. Warner, D. J. Smith, P. Davey, S. Hennige, and N. R. Baker. 2008. Photosynthesis and production of hydrogen peroxide by Symbiodinium (Pyrrhophyta) phylotypes with different thermal tolerances. Journal of Phycology 44:948-956. 2008 South & Central America; Caribbean Algae; Primary Production; Stony Coral
Sun, D., R. Su, T. A. McConnaughey, and J. Bloemendal. 2008. Variability of skeletal growth and δ13C in massive corals from the South China Sea: Effects of photosynthesis, respiration and human activities. Chemical Geology 255:414-425. 2008 China Light; Nutrients; Primary Production; Stony Coral
Tanaka, Y., T. Miyajima, I. Koike, T. Hayashibara, and H. Ogawa. 2008. Production of dissolved and particulate organic matter by the reef-building corals Porites cylindrica and Acropora pulchra. Bulletin of Marine Science 82:237-245. 2008 Cuba Nutrients; Primary Production; Stony Coral
Treignier, C., R. Grover, C. Ferrier-Pages, and I. Tolosa. 2008. Effect of light and feeding on the fatty acid and sterol composition of zooxanthellae and host tissue isolated from the scleractinian coral Turbinaria reniformis. Limnology and Oceanography 53:2702-2710. 2008 Algae; Light; Plankton; Primary Production; Stony Coral; Zooxanthellae
Venn, A. A., J. E. Loram, and A. E. Douglas. 2008. Photosynthetic symbioses in animals. Pages 1069-1080 in Journal of Experimental Botany. 2008 Algae; Anemones & Zooanthids; Cyanobacteria; Light; Microorganisms; Nutrients; Primary Production; Sponges
Wang, L.-H., Y.-H. Liu, Y.-M. Ju, Y.-Y. Hsiao, L.-S. Fang, and C.-S. Chen. 2008. Cell cycle propagation is driven by light-dark stimulation in a cultured symbiotic dinoflagellate isolated from corals. Coral Reefs 27:823-835. 2008 Primary Production
Werner, U., A. Blazejak, P. Bird, G. Eickert, R. Schoon, R. M. M. Abed, A. Bissett, and D. de Beer. 2008. Microbial photosynthesis in coral reef sediments (Heron Reef, Australia). Estuarine Coastal and Shelf Science 76:876-888. 2008 Australia Algae; Cyanobacteria; Microorganisms; Nutrients; Primary Production; Sediment
Wilmsen, M. and F. Neuweiler. 2008. Biosedimentology of the Early Jurassic post-extinction carbonate depositional system, central High Atlas rift basin, Morocco. Sedimentology 55:773-807. 2008 Climate; Echinoderms; Marine Worms; Plankton; Primary Production; Sediment; Sponges
Wolanski, E., K. E. Fabricius, T. F. Cooper, and C. Humphrey. 2008. Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef. Estuarine Coastal and Shelf Science 77:755-762. 2008 Australia Landscape Conservation & Restoration; Light; Nutrients; Primary Production; Sediment; Surface & Groundwater Flow
Zepp, R. G., G. C. Shank, E. Stabenau, K. W. Patterson, M. Cyterski, W. Fisher, E. Bartels, and S. L. Anderson. 2008. Spatial and temporal variability of solar ultraviolet exposure of coral assemblages in the Florida Keys: Importance of colored dissolved organic matter. Limnology and Oceanography 53:1909-1922. 2008 Florida Model Light; Primary Production
Alongi, D. M., L. A. Trott, and J. Pfitzner. 2007. Deposition, mineralization, and storage of carbon and nitrogen in sediments of the far northern and northern Great Barrier Reef shelf. Continental Shelf Research 27:2595-2622. 2007 Australia; Cuba; Europe CO2; Discharges; Nutrient & Contaminant Processing; Nutrients; Plankton; Primary Production; Sediment; Surface & Groundwater Flow; Trawling & Fishing Gear Damage; Water Depth & Sea Level
Biel, K. Y., R. D. Gates, and L. Muscatine. 2007. Effects of free amino acids on the photosynthetic carbon metabolism of symbiotic dinoflagellates. Russian Journal of Plant Physiology 54:171-183. 2007 Cuba Model Anemones & Zooanthids; Primary Production; Stony Coral
Brando, V. E., B. J. Robson, N. R. C. Cherukuru, A. G. Dekker, and I. T. Webster. 2007. Towards assimilation of ocean colour satellite observation into coastal ocean biogeochemical models: The tropical Fitzroy River Estuary case study. Proceedings of SPIE - The International Society for Optical Engineering 6685. 2007 Global; Australia Field Study & Monitoring; Model; Remote Sensing Nutrients; Primary Production; Sediment; Surface & Groundwater Flow
Camilli, R., O. Pizarro, and L. Camilli. 2007. Rapid swath mapping of reef ecology and associated water column chemistry in the Gulf of Chiriqui, Panama. in Oceans Conference Record (IEEE). 2007 US Pacific & Hawaii; Panama; Pacific Ocean GIS & Maps Biological Monitoring, Mapping, & Scientific Research; Complex Habitat & Resources; Primary Production
Campbell, S. J., L. J. McKenzie, S. P. Kerville, and J. S. Bite. 2007. Patterns in tropical seagrass photosynthesis in relation to light, depth and habitat. Estuarine Coastal and Shelf Science 73:551-562. 2007 Australia Index or Indicator Climate; Light; Primary Production; Seagrasses
Cantin, N. E., A. P. Negri, and B. L. Willis. 2007. Photoinhibition from chronic herbicide exposure reduces reproductive output of reef-building corals. Marine Ecology Progress Series 344:81-93. 2007 Australia Fertilizer & Pesticide Use; Primary Production; Stony Coral
Carleton, J. H. and A. D. McKinnon. 2007. Resident mysids: Secondary production, consumption, and trophic role in a coral reef lagoon. Marine Ecology Progress Series 336:89-98. 2007 US Pacific & Hawaii; Australia Microorganisms; Plankton; Primary Production; Sediment
Carpenter, L. W. and M. R. Patterson. 2007. Water flow influences the distribution of photosynthetic efficiency within colonies of the scleractinian coral Montastrea annularis (Ellis and Solander, 1786); implications for coral bleaching. Journal of Experimental Marine Biology and Ecology 351:26-Oct. 2007 Primary Production; Seawater Flow; Special Use Permitting; Stony Coral; Surface & Groundwater Flow
Carpenter, R. C. and S. L. Williams. 2007. Mass transfer limitation of photosynthesis of coral reef algal turfs. Marine Biology 151:435-450. 2007 US Pacific & Hawaii Primary Production
Charpy, L., R. Alliod, M. Rodier, and S. Golubic. 2007. Benthic nitrogen fixation in the SW New Caledonia lagoon. Aquatic Microbial Ecology 47:73-81. 2007 New Caledonia Cyanobacteria; Microorganisms; Nutrients; Primary Production
Dawson, T. L. 2007. Light-harvesting and light-protecting pigments in simple life forms. Coloration Technology 123:129-142. 2007 Review Algae; Light; Primary Production
De Goeij, J. M. and F. C. Van Duyl. 2007. Coral cavities are sinks of dissolved organic carbon (DOC). Limnology and Oceanography 52:2608-2617. 2007 Antilles; Indonesia Primary Production
Debrenne, F. 2007. Lower Cambrian archaeocyathan bioconstructions. Comptes Rendus - Palevol 6:19-May. 2007 Primary Production
Downs, C. and A. Downs. 2007. Preliminary examination of short-term cellular toxicological responses of the coral Madracis mirabilis to acute Irgarol 1051 exposure. Archives of Environmental Contamination and Toxicology 52:47-57. 2007 Fertilizer & Pesticide Use; Primary Production; Stony Coral
Elahi, R. and P. J. Edmunds. 2007. Determinate growth and the scaling of photosynthetic energy intake in the solitary coral Fungia concinna (Verrill). Journal of Experimental Marine Biology and Ecology 349:183-193. 2007 Model Anemones & Zooanthids; Primary Production; Stony Coral
Fagan, K. E. and F. T. Mackenzie. 2007. Air-sea CO2 exchange in a subtropical estuarine-coral reef system, Kaneohe Bay, Oahu, Hawaii. Marine Chemistry 106:174-191. 2007 US Pacific & Hawaii CO2; Non-point Source Runoff; Nutrients; Plankton; Primary Production; Storms & Hurricanes; Surface & Groundwater Flow; Water Depth & Sea Level
Finelli, C. M., B. S. Helmuth, N. D. Pentcheff, and D. S. Wethey. 2007. Intracolony variability in photosynthesis by corals is affected by water flow: Role of oxygen flux. Marine Ecology Progress Series 349:103-110. 2007 Florida Field Study & Monitoring Light; Primary Production; Seawater Flow; Stony Coral; Surface & Groundwater Flow
Fishe, W. S., W. P. Davis, R. L. Quarles, J. Patrick, J. G. Campbell, P. S. Harris, B. L. Hemmer, and M. Parsons. 2007. Characterizing coral condition using estimates of three-dimensional colony surface area. Environmental Monitoring and Assessment 125:347-360. 2007 Florida Field Study & Monitoring Biological Monitoring, Mapping, & Scientific Research; Calcium Carbonate Deposition; Fishing Sector; Infrastructure; Primary Production; Shoreline Protection; Stony Coral; Tourism & Recreation; Valuation
Furnas, M. 2007. Intra-seasonal and inter-annual variations in phytoplankton biomass, primary production and bacterial production at North West Cape, Western Australia: Links to the 1997-1998 El Nino event. Continental Shelf Research 27:958-980. 2007 Australia; Indian Ocean; India; Indonesia Light; Microorganisms; Nutrients; Plankton; Primary Production; Surface & Groundwater Flow; Water Depth & Sea Level
Goffredo, S., E. Caroselli, E. Pignotti, G. Mattioli, and F. Zaccanti. 2007. Variation in biometry and population density of solitary corals with solar radiation and sea surface temperature in the Mediterranean Sea. Marine Biology 152:351-361. 2007 Light; Primary Production; Zooxanthellae
Hirayama, H., M. Sunamura, K. Takai, T. Nunoura, T. Noguchi, H. Oida, Y. Furushima, H. Yamamoto, T. Oomori, and K. Horikoshi. 2007. Culture-dependent and -independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a coral reef off Taketomi Island, Japan. Applied and Environmental Microbiology 73:7642-7656. 2007 Japan Microorganisms; Primary Production
Janssen, J., J. E. Marsden, C. R. Bronte, D. J. Jude, S. P. Sitar, and F. W. Goetz. 2007. Challenges to deep-water reproduction by lake trout: Pertinence to restoration in Lake Michigan. Journal of Great Lakes Research 33:59-74. 2007 Cuba Invasive Species; Plankton; Primary Production
Khalesi, M. K., H. H. Beeftink, and R. H. Wijffels. 2007. Flow-dependent growth in the zooxanthellate soft coral Sinularia flexibilis. Journal of Experimental Marine Biology and Ecology 351:106-113. 2007 Octocoral; Pharmaceuticals & Cosmetics; Pharmaceuticals & Cosmetics Sources; Primary Production; Zooxanthellae
Lau, R. K. L., A. C. M. Kwok, W. K. Chan, T. Y. Zhang, and J. T. Y. Wong. 2007. Mechanical characterization of cellulosic thecal plates in dinoflagellates by nanoindentation. Journal of Nanoscience and Nanotechnology 7:452-457. 2007 Microorganisms; Plankton; Primary Production
Lesser, M. P., L. I. Falcon, A. Rodriguez-Roman, S. Enriquez, O. Hoegh-Guldberg, and R. Iglesias-Prieto. 2007. Nitrogen fixation by symbiotic cyanobacteria provides a source of nitrogen for the scleractinian coral Montastraea cavernosa. Marine Ecology Progress Series 346:143-152. 2007 South & Central America; Caribbean Field Study & Monitoring; Model Cyanobacteria; Microorganisms; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Masotti, I., D. Ruiz-Pino, and A. Le Bouteiller. 2007. Photosynthetic characteristics of Trichodesmium in the southwest Pacific Ocean: Importance and significance. Marine Ecology Progress Series 338:47-59. 2007 US Pacific & Hawaii; Pacific Ocean Cyanobacteria; Light; Microorganisms; Plankton; Primary Production; Surface & Groundwater Flow
Mass, T., S. Einbinder, E. Brokovich, N. Shashar, R. Vago, J. Erez, and Z. Dubinsky. 2007. Photoacclimation of Stylophora pistillata to light extremes: Metabolism and calcification. Marine Ecology Progress Series 334:93-102. 2007 Plankton; Primary Production
McKinnon, A. D., J. H. Carleton, and S. Duggan. 2007. Pelagic production and respiration in the Gulf of Papua during May 2004. Continental Shelf Research 27:1643-1655. 2007 Cuba Discharges; Plankton; Primary Production; Surface & Groundwater Flow
Miyajima, T., H. Hata, Y. Umezawa, H. Kayanne, and I. Koike. 2007. Distribution and partitioning of nitrogen and phosphorus in a fringing reef lagoon of Ishigaki Island, northwestern Pacific. Marine Ecology Progress Series 341:45-57. 2007 US Pacific & Hawaii; China Model Nutrients; Primary Production
Myers, J. L., R. Sekar, and L. L. Richardson. 2007. Molecular detection and ecological significance of the cyanobacterial genera Geitlerinema and Leptolyngbya in black band disease of corals. Applied and Environmental Microbiology 73:5173-5182. 2007 Florida; US Virgin Islands; Bahamas; Philippines Field Study & Monitoring; Lab Study Cyanobacteria; Light; Microorganisms; Pathogens; Primary Production; Stony Coral
Nakamura, T. and T. Nakamori. 2007. A geochemical model for coral reef formation. Coral Reefs 26:741-755. 2007 Field Study & Monitoring; Model Primary Production
Nisbet, E. G., N. V. Grassineau, C. J. Howe, P. I. Abell, M. Regelous, and R. E. R. Nisbet. 2007. The age of Rubisco: The evolution of oxygenic photosynthesis. Geobiology 5:311-335. 2007 CO2; Primary Production
Oren, A. and N. Gunde-Cimerman. 2007. Mycosporines and mycosporine-like amino acids: UV protectants or multipurpose secondary metabolites? FEMS Microbiology Letters 269:10-Jan. 2007 Europe Review Algae; Cyanobacteria; Microorganisms; Nutrients; Primary Production; Sunscreen Use
Pawlik, J. R., L. Steindler, T. P. Henkel, S. Beer, and M. Ilan. 2007. Chemical warfare on coral reefs: Sponge metabolites differentially affect coral symbiosis in situ. Limnology and Oceanography 52:907-911. 2007 South & Central America; Caribbean Algae; Primary Production; Sponges; Zooxanthellae
Peirano, A. 2007. In vivo measurements of the seasonal photosynthetic fluorescence of the Mediterranean coral Cladocora caespitosa (L.). Scientia Marina 71:629-635. 2007 Cuba Light; Plankton; Primary Production; Zooxanthellae
Ralph, P. J., A. W. D. Larkum, and M. Kuhl. 2007. Photobiology of endolithic microorganisms in living coral skeletons: 1. Pigmentation, spectral reflectance and variable chlorophyll fluorescence analysis of endoliths in the massive corals Cyphastrea serailia, Porites lutea and Goniastrea australensis. Marine Biology 152:395-404. 2007 Light; Microorganisms; Primary Production; Stony Coral
Rodrigues, L. J. and A. G. Grottoli. 2007. Energy reserves and metabolism as indicators of coral recovery from bleaching. Limnology and Oceanography 52:1874-1882. 2007 Index or Indicator Primary Production; Zooxanthellae
Rosenberg, E., O. Koren, L. Reshef, R. Efrony, and I. Zilber-Rosenberg. 2007. The role of microorganisms in coral health, disease and evolution. Nature Reviews Microbiology 5:355-362. 2007 Field Study & Monitoring Algae; Microorganisms; Nutrients; Pathogens; Primary Production
Silverman, J., B. Lazar, and J. Erez. 2007. Community metabolism of a coral reef exposed to naturally varying dissolved inorganic nutrient loads. Biogeochemistry 84:67-82. 2007 Calcium Carbonate Deposition; Nutrients; Primary Production
Tanaka, Y., T. Miyajima, I. Koike, T. Hayashibara, and H. Ogawa. 2007. Imbalanced coral growth between organic tissue and carbonate skeleton caused by nutrient enrichment. Limnology and Oceanography 52:1139-1146. 2007 Cuba Lab Study Nutrients; Primary Production; Stony Coral; Zooxanthellae
Thiel, M., E. C. Macaya, E. Acuna, W. E. Arntz, H. Bastias, K. Brokordt, P. A. Camus, J. C. Castilla, L. R. Castro, M. Cortes, C. P. Dumont, R. Escribano, M. Fernandez, J. A. Gajardo, C. F. Gaymer, I. Gomez, A. E. Gonzalez, H. E. Gonzalez, P. A. Haye, and J.-E. Illanes. 2007. The Humboldt Current System of northern and central Chile - Oceanographic processes, ecological interactions and socioeconomic feedback. Oceanography and Marine Biology 45:195-344. 2007 South & Central America Review; Field Study & Monitoring; Decision Support Frameworks & Tools Algae; Decision Support; Environmental Monitoring, Mapping, & Scientific Research; Fishing Sector; Invertebrates; Marine Birds; Marine Protected Areas; Microorganisms; Non-point Source Runoff; Nutrients; Plankton; Primary Production; Sediment; Surface & Groundwater Flow; Whales & Dolphins
Titlyanov, E. A., I. M. Yakovleva, and T. V. Titlyanova. 2007. Interaction between benthic algae (Lyngbya bouillonii, Dictyota dichotoma) and scleractinian coral Porites lutea in direct contact. Journal of Experimental Marine Biology and Ecology 342:282-291. 2007 Algae; Fleshy Macroalgae; Light; Primary Production; Stony Coral; Substrate; Zooxanthellae
Ulstrup, K. E., M. J. H. Van Oppen, M. Kuhl, and P. J. Ralph. 2007. Inter-polyp genetic and physiological characterisation of Symbiodinium in an Acropora valida colony. Marine Biology 153:225-234. 2007 Algae; Climate; Light; Primary Production; Stony Coral; Zooxanthellae
Ulstrup, K. E., M. Kuhl, and D. G. Bourne. 2007. Zooxanthellae harvested by ciliates associated with brown band syndrome of corals remain photosynthetically competent. Applied and Environmental Microbiology 73:1968-1975. 2007 Light; Primary Production; Zooxanthellae
van der Velde, M., S. R. Green, M. Vanclooster, and B. E. Clothier. 2007. Sustainable development in small island developing states: Agricultural intensification, economic development, and freshwater resources management on the coral atoll of Tongatapu. Ecological Economics 61:456-468. 2007 US Pacific & Hawaii; Australia; Pacific Ocean; Japan; Tonga Decision Support Frameworks & Tools Agriculture; Primary Production; Tourism & Recreation
Zepp, R.G., G.C. Shank, E. Stabenau, K.W. Patterson, and M. Cyterski. 2007. Geographic and seasonal variations in UV exposure of coral assemblages in the Florida Keys. Limnology and Oceanography 2007 Florida Model Light; Primary Production
Zhukova, N. V. 2007. Changes in the fatty acid composition of symbiotic dinoflagellates from the hermatypic coral Echinopora lamellosa during adaptation to the irradiance level. Russian Journal of Plant Physiology 54:763-769. 2007 Light; Primary Production; Zooxanthellae
Alongi, D. M., J. Pfitzner, and L. A. Trott. 2006. Deposition and cycling of carbon and nitrogen in carbonate mud of the lagoons of Arlington and Sudbury Reefs, Great Barrier Reef. Coral Reefs 25:123-143. 2006 Australia; Cuba Calcium Carbonate Deposition; CO2; Nutrients; Primary Production; Sediment
Beach, K. S., L. J. Walters, and H. B. Borgeas. 2006. Irradiance and nutrient limitation of Dicytota spp. populations on Conch Reef, Florida Keys, USA. Journal of Experimental Marine Biology and Ecology 329:101-112. 2006 Florida Field Study & Monitoring Fleshy Macroalgae; Light; Nutrients; Primary Production
Bjorn, L. O. and N. G. A. Ekelund. 2006. Corals and zooxanthellae - A marine partnership [Koraller och zooxantheller - Ett marint partnerskap]. Svensk Botanisk Tidskrift 100:263-270. 2006 Algae; Climate; CO2; Petroleum Spills; Primary Production; Stony Coral; Zooxanthellae
Brock, J. C., K. K. Yates, R. B. Halley, I. B. Kuffner, C. W. Wright, and B. G. Hatcher. 2006. Northern Florida reef tract benthic metabolism scaled by remote sensing. Marine Ecology Progress Series 312:123-139. 2006 Florida; Cuba GIS & Maps; Remote Sensing Calcium Carbonate Deposition; Nutrients; Primary Production
Bruno, J. F., S. C. Lee, J. S. Kertesz, R. C. Carpenter, Z. T. Long, and J. Emmett Duffy. 2006. Partitioning the effects of algal species identity and richness on benthic marine primary production. Oikos 115:170-178. 2006 Jamaica Field Study & Monitoring Algae; Primary Production
Carbery, K., R. Owen, T. Frickers, E. Otero, and J. Readman. 2006. Contamination of Caribbean coastal waters by the antifouling herbicide Irgarol 1051. Marine Pollution Bulletin 52:635-644. 2006 South & Central America; US Virgin Islands; Puerto Rico; Caribbean Fertilizer & Pesticide Use; Mangroves; Primary Production
Copertino, M. S., A. Cheshire, and J. Watling. 2006. Photoinhibition and photoacclimation of turf algal communities on a temperate reef, after in situ transplantation experiments. Journal of Phycology 42:580-592. 2006 Australia Algae; Light; Primary Production; Substrate; Turf Algae
Crabbe, M. J. C. and D. J. Smith. 2006. Modelling variations in corallite morphology of Galaxea fascicularis coral colonies with depth and light on coastal fringing reefs in the Wakatobi Marine National Park (S.E. Sulawesi, Indonesia). Computational Biology and Chemistry 30:155-159. 2006 Indonesia Model Light; Primary Production; Sediment
Davy, S. K., K. J. T. Withers, and R. Hinde. 2006. Effects of host nutritional status and seasonality on the nitrogen status of zooxanthellae in the temperate coral Plesiastrea versipora (Lamarck). Journal of Experimental Marine Biology and Ecology 335:256-265. 2006 Field Study & Monitoring; Index or Indicator Nutrients; Plankton; Primary Production; Stony Coral; Zooxanthellae
DeBoer, M. L., D. A. Krupp, and V. M. Weis. 2006. Two atypical carbonic anhydrase homologs from the planula larva of the scleractinian coral Fungia scutaria. Biological Bulletin 211:18-30. 2006 US Pacific & Hawaii Lab Study Anemones & Zooanthids; Primary Production; Stony Coral
Dominik, C. M. and R. C. Zimmerman. 2006. Dynamics of carbon allocation in a deep-water population of the deciduous kelp Pleurophycus gardneri (Laminariales). Marine Ecology Progress Series 309:143-157. 2006 US Pacific & Hawaii Model Carbon Storage & Cycling; Light; Primary Production; Storms & Hurricanes
Downs, C. and A. Downs. 2006. Preliminary examination of short-term cellular toxicologic responsesof the coral Madracis mirabilis to acute irgarol 1051 exposure. Archives of Environmental Contamination and Toxicology 20:1-10. 2006 Primary Production
Enriquez, S. and A. Rodriguez-Roman. 2006. Effect of water flow on the photosynthesis of three marine macrophytes from a fringing-reef lagoon. Marine Ecology Progress Series 323:119-132. 2006 Algae; Fleshy Macroalgae; Light; Primary Production; Seagrasses; Seawater Flow
Field, S. F., M. Y. Bulina, I. V. Kelmanson, J. P. Bielawski, and M. V. Matz. 2006. Adaptive evolution of multicolored fluorescent proteins in reef-building corals. Journal of Molecular Evolution 62:332-339. 2006 Field Study & Monitoring Algae; Primary Production; Special Use Permitting; Stony Coral; Zooxanthellae
Finelli, C. M., B. S. T. Helmuth, N. D. Pentcheff, and D. S. Wethey. 2006. Water flow influences oxygen transport and photosynthetic efficiency in corals. Coral Reefs 25:47-57. 2006 Field Study & Monitoring Mitigation; Primary Production; Seawater Flow; Stony Coral; Zooxanthellae
Gattuso, J.-P., B. Gentili, C. M. Duarte, J. A. Kleypas, J. J. Middelburg, and D. Antoine. 2006. Light availability in the coastal ocean: Impact on the distribution of benthic photosynthetic organisms and contribution to primary production. Biogeosciences Discussions 3:895-959. 2006 Global Review Algae; Light; Primary Production; Seagrasses
Gili, J.-M., S. Rossi, F. Pages, C. Orejas, N. Teixido, P. J. Lopez-Gonzalez, and W. E. Arntz. 2006. A new trophic link between the pelagic and benthic systems on the Antarctic shelf. Marine Ecology Progress Series 322:43-49. 2006 Octocoral; Plankton; Primary Production; Sediment
Gimenez Casalduero, F. and C. Muniain. 2006. Photosynthetic activity of the solar-powered lagoon mollusc Elysia timida (Risso, 1818) (Opisthobranchia: Sacoglossa). Symbiosis 41:151-158. 2006 Model Calcareous Macroalgae; Light; Molluscs; Primary Production; Zooxanthellae
Grant, A. J., D. A. Trautman, I. Menz, and R. Hinde. 2006. Separation of two cell signalling molecules from a symbiotic sponge that modify algal carbon metabolism. Biochemical and Biophysical Research Communications 348:92-98. 2006 Primary Production; Sponges
Grant, A. J., M. Remond, T. Starke-Peterkovic, and R. Hinde. 2006. A cell signal from the coral Plesiastrea versipora reduces starch synthesis in its symbiotic alga, Symbiodinium sp. Comparative Biochemistry and Physiology Part A 144:458-463. 2006 Cuba Algae; Primary Production; Stony Coral
Halpern, B.S., K. Cottenie, B.R. Broitman. 2006. Strong Top-Down Control in Southern California Kelp Forest Ecosystems. Science 312:1230-1232. 2006 Global Finfish Harvest; Non-point Source Runoff; Nutrients; Primary Production; Special Use Permitting
Hase, C., M. Al-Qutob, Z. Dubinsky, E. A. Ibrahim, B. Lazar, N. Stambler, and M. M. Tilzer. 2006. A system in balance? - Implications of deep vertical mixing for the nitrogen budget in the northern Red Sea, including the Gulf of Aqaba (Eilat). Biogeosciences Discussions 3:383-408. 2006 Nutrient & Contaminant Processing; Nutrients; Primary Production
Hirose, E., S. Hirabayashi, K. Hori, F. Kasai, and M. M. Watanabe. 2006. UV protection in the photosymbiotic ascidian Didemnum molle inhabiting different depths. Zoological Science 23:57-63. 2006 Japan Light; Primary Production
Hoogenboom, M. O., K. R. N. Anthony, and S. R. Connolly. 2006. Energetic cost of photoinhibition in corals. Marine Ecology Progress Series 313:12-Jan. 2006 Lab Study Light; Primary Production; Stony Coral
Jensen, L. T., E. Rosenqvist, and J. M. Aaslyng. 2006. A daylight climate chamber for testing greenhouse climate control strategies and calculating canopy carbon dioxide exchange. HortTechnology 16:191-198. 2006 CO2; Irrigation; Light; Primary Production
Kahn, A. E. and M. J. Durako. 2006. Thalassia testudinum seedling responses to changes in salinity and nitrogen levels. Journal of Experimental Marine Biology and Ecology 335:12-Jan. 2006 Florida Nutrients; Primary Production; Salinity; Seagrasses; Special Use Permitting
Lee, J. J. 2006. Algal symbiosis in larger foraminifera. Symbiosis 42:63-75. 2006 Cuba Field Study & Monitoring; Lab Study Algae; Cyanobacteria; Microorganisms; Nutrients; Ports & Harbors; Primary Production
Levy, O., Y. Achituv, Y. Z. Yacobi, N. Stambler, and Z. Dubinsky. 2006. The impact of spectral composition and light periodicity on the activity of two antioxidant enzymes (SOD and CAT) in the coral Favia favus. Journal of Experimental Marine Biology and Ecology 328:35-46. 2006 Lab Study Algae; Light; Primary Production; Zooxanthellae
Levy, O., Y. Achituv, Y. Z. Yacobi, Z. Dubinsky, and N. Stambler. 2006. Diel 'tuning' of coral metabolism: Physiological responses to light cues. Journal of Experimental Biology 209:273-283. 2006 Algae; Light; Primary Production; Stony Coral; Zooxanthellae
Levy, O., Z. Dubinsky, Y. Achituv, and J. Erez. 2006. Diurnal polyp expansion behavior in stony corals may enhance carbon availability for symbionts photosynthesis. Journal of Experimental Marine Biology and Ecology 333:11-Jan. 2006 Algae; Light; Plankton; Primary Production; Stony Coral; Zooxanthellae
Montagna, P., M. McCulloch, M. Taviani, C. Mazzoli, and B. Vendrell. 2006. Phosphorus in cold-water corals as a proxy for seawater nutrient chemistry. Science 312:1788-1791. 2006 Decision Support Frameworks & Tools Nutrients; Primary Production
Moya, A., S. Tambutte, E. Tambutte, D. Zoccola, N. Caminiti, and D. Allemand. 2006. Study of calcification during a daily cycle of the coral Stylophora pistillata: Implications for 'light-enhanced calcification'. Journal of Experimental Biology 209:3413-3419. 2006 Primary Production; Stony Coral
Olson, J. M. 2006. Photosynthesis in the Archean era. Photosynthesis Research 88:109-117. 2006 Australia; South Africa Cyanobacteria; Primary Production
Ramade, F. and H. Roche. 2006. Pollutant effects on coral reefs ecosystems [Effets des polluants sur les ecosystemes recifaux]. Revue d'Ecologie (La Terre et la Vie) 61:Mar-33. 2006 Global Algae; Complex Habitat & Resources; Discharges; Fertilizer & Pesticide Use; Finfish Harvest; Mangroves; Primary Production; Sediment; Stony Coral; Zooxanthellae
Ravindran, J. and C. Raghukumar. 2006. Pink-line syndrome, a physiological crisis in the scleractinian coral Porites lutea. Marine Biology 149:347-356. 2006 Index or Indicator CO2; Cyanobacteria; Microorganisms; Pathogens; Primary Production; Stony Coral; Zooxanthellae
Rodolfo-Metalpa, R., C. Richard, D. Allemand, and C. Ferrier-Pages. 2006. Growth and photosynthesis of two Mediterranean corals, Cladocora caespitosa and Oculina patagonica, under normal and elevated temperatures. Journal of Experimental Biology 209:4546-4556. 2006 Cuba Primary Production; Zooxanthellae
Rodriguez-Roman, A., X. Hernandez-Pech, P. E. Thome, S. Enriquez, and R. Iglesias-Prieto. 2006. Photosynthesis and light utilization in the Caribbean coral Montastraea faveolata recovering from a bleaching event. Limnology and Oceanography 51:2702-2710. 2006 South & Central America; Caribbean Algae; Light; Primary Production; Stony Coral
Saito, H. and K. Furuya. 2006. Endosymbiosis in microalgae with special attention to Noctiluca scintillans. Bulletin of the Plankton Society of Japan 53:14-21. 2006 Southeast Asia Lab Study Algae; Primary Production
Schneider, K. and J. Erez. 2006. The effect of carbonate chemistry on calcification and photosynthesis in the hermatypic coral Acropora eurystoma. Limnology and Oceanography 51:1284-1293. 2006 Lab Study CO2; Primary Production; Special Use Permitting; Stony Coral
Sinclair, D. J. and M. J. Risk. 2006. A numerical model of trace-element coprecipitation in a physicochemical calcification system: Application to coral biomineralization and trace-element 'vital effects'. Geochimica et Cosmochimica Acta 70:3855-3868. 2006 Model; Decision Support Frameworks & Tools Calcium Carbonate Deposition; CO2; Primary Production
Stanley, S. M. 2006. Influence of seawater chemistry on biomineralization throughout phanerozoic time: Paleontological and experimental evidence. Palaeogeography, Palaeoclimatology, Palaeoecology 232:214-236. 2006 Lab Study Algae; Calcium Carbonate Deposition; CO2; Primary Production; Sponges
Tentori, E. and D. Allemand. 2006. Light-enhanced calcification and dark decalcification in isolates of the soft coral Cladiella sp. during tissue recovery. Biological Bulletin 211:193-202. 2006 Lab Study Octocoral; Primary Production; Stony Coral; Zooxanthellae
Tice, M. M. and D. R. Lowe. 2006. The origin of carbonaceous matter in pre-3.0 Ga greenstone terrains: A review and new evidence from the 3.42 Ga Buck Reef Chert. Earth-Science Reviews 76:259-300. 2006 South Africa Review; Field Study & Monitoring; Model Primary Production; Sediment; Storms & Hurricanes
Titlyanov, E. A., T. V. Titlyanova, I. M. Yakovleva, and O. S. Sergeeva. 2006. Influence of winter and spring/summer algal communities on the growth and physiology of adjacent scleractinian corals. Botanica Marina 49:200-207. 2006 Japan Algae; Plankton; Primary Production; Stony Coral
Tribollet, A., C. Langdon, S. Golubic, and M. Atkinson. 2006. Endolithic microflora are major primary producers in dead carbonate substrates of Hawaiian coral reefs. Journal of Phycology 42:292-303. 2006 US Pacific & Hawaii Algae; Cyanobacteria; Microorganisms; Primary Production; Skeletal Coral; Stony Coral; Substrate; Turf Algae
Tribollet, A., M. J. Atkinson, and C. Langdon. 2006. Effects of elevated pCO2 on epilithic and endolithic metabolism of reef carbonates. Global Change Biology 12:2200-2208. 2006 US Pacific & Hawaii Lab Study Algae; CO2; Coralline Algae; Cyanobacteria; Microorganisms; Primary Production; Skeletal Coral; Stony Coral
Ulstrup, K. E., P. J. Ralph, A. W. D. Larkum, and M. Kuhl. 2006. Intra-colonial variability in light acclimation of zooxanthellae in coral tissues of Pocillopora damicornis. Marine Biology 149:1325-1335. 2006 Light; Primary Production; Stony Coral; Zooxanthellae
Uthicke, S. 2006. Photosynthetic efficiency and rapid light curves of sediment-biofilms along a water quality gradient in the Great Barrier Reef, Australia. Marine Ecology Progress Series 322:61-73. 2006 Australia Field Study & Monitoring; Lab Study; Index or Indicator Algae; Light; Nutrients; Primary Production; Sediment
Villanueva, R. D., H. T. Yap, and M. N. E. Montano. 2006. Intensive fish farming in the Philippines is detrimental to the reef-building coral Pocillopora damicornis. Marine Ecology Progress Series 316:165-174. 2006 Philippines Aquaculture; Nutrients; Primary Production; Sediment; Stony Coral; Substrate
Watanabe, A., H. Kayanne, H. Hata, S. Kudo, K. Nozaki, K. Kato, A. Negishi, Y. Ikeda, and H. Yamano. 2006. Analysis of the seawater CO2 system in the barrier reef-lagoon system of Palau using total alkalinity-dissolved inorganic carbon diagrams. Limnology and Oceanography 51:1614-1628. 2006 Palau CO2; Primary Production; Seawater Flow
Werner, U., P. Bird, C. Wild, T. Ferdelman, L. Polerecky, G. Eickert, R. Jonstone, O. Hoegh-Guldberg, and D. De Beer. 2006. Spatial patterns of aerobic and anaerobic mineralization rates and oxygen penetration dynamics in coral reef sediments. Marine Ecology Progress Series 309:93-105. 2006 Australia Primary Production; Sediment
Zhukova, N. V. and E. A. Titlyanov. 2006. Effect of light intensity on the fatty acid composition of dinoflagellates symbiotic with hermatypic corals. Botanica Marina 49:339-346. 2006 Hydrocoral; Light; Primary Production; Stony Coral; Zooxanthellae
Al-Horani, F. A. 2005. Effects of changing seawater temperature on photosynthesis and calcification in the scleractinian coral Galaxea fascicularis, measured with O2, Ca2+ and pH microsensors. Scientia Marina 69:347-354. 2005 Cuba CO2; Primary Production; Stony Coral
Al-Horani, F. A., T. Ferdelman, S. M. Al-Moghrabi, and D. De Beer. 2005. Spatial distribution of calcification and photosynthesis in the scleractinian coral Galaxea fascicularis. Coral Reefs 24:173-180. 2005 Primary Production; Stony Coral
Al-Horani, F., S. Al-Rousan, R. Manasrah, and M. Rasheed. 2005. Coral calcification: Use of radioactive isotopes and metabolic inhibitors to study the interactions with photosynthesis and respiration. Chemistry and Ecology 21:325-335. 2005 Lab Study Primary Production; Stony Coral
Anthony, K. R. N., M. O. Hoogenboom, and S. R. Connolly. 2005. Adaptive variation in coral geometry and the optimization of internal colony light climates. Functional Ecology 19:17-26. 2005 Field Study & Monitoring; Model Climate; Light; Primary Production; Stony Coral; Water Depth & Sea Level
Badran, M. I., M. Rasheed, R. Manasrah, and T. Al-Najjar. 2005. Nutrient flux fuels the summer primary productivity in the oligotrophic waters of the Gulf of Aqaba, Red Sea. Oceanologia 47:47-60. 2005 Model Light; Nutrients; Primary Production
Burghardt, I., J. Evertsen, G. Johnsen, and H. Wagele. 2005. Solar powered seaslugs - Mutualistic symbiosis of aeolid nudibranchia (Mollusca, Gastropoda, Opisthobranchia) with Symbiodinium. Symbiosis 38:227-250. 2005 Dive, Snorkeling, & Swimming Tourism; Housing; Light; Molluscs; Octocoral; Primary Production; Zooxanthellae
Castillo, K. D. and B. S. T. Helmuth. 2005. Influence of thermal history on the response of Montastraea annularis to short-term temperature exposure. Marine Biology 148:261-270. 2005 South & Central America; Belize; Honduras Primary Production; Stony Coral
Clavier, J., G. Boucher, L. Chauvaud, R. Fichez, and S. Chifflet. 2005. Benthic response to ammonium pulses in a tropical lagoon: Implications for coastal environmental processes. Journal of Experimental Marine Biology and Ecology 316:231-241. 2005 New Caledonia Light; Microorganisms; Nutrients; Primary Production; Sediment; Wastewater Discharge
Cox, G. and A. Salih. 2005. Fluorescence lifetime imaging of symbionts and fluorescent proteins in reef corals. Pages 162-170 in Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2005 Index or Indicator Algae; Primary Production; Stony Coral; Zooxanthellae
Ferrier-Pages, C., F. Houlbreque, E. Wyse, C. Richard, D. Allemand, and F. Boisson. 2005. Bioaccumulation of zinc in the scleractinian coral Stylophora pistillata. Coral Reefs 24:636-645. 2005 Cuba Nutrients; Primary Production; Stony Coral; Zooxanthellae
Furnas, M., A. Mitchell, M. Skuza, and J. Brodie. 2005. In the other 90%: Phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef Lagoon. Marine Pollution Bulletin 51:253-265. 2005 Australia Algae; Microorganisms; Nutrients; Plankton; Primary Production; Seagrasses; Sediment
Gischler, E. and W. Oschmann. 2005. Historical climate variation in Belize (Central America) as recorded in scleractinian coral skeletons. Palaios 20:159-174. 2005 South & Central America; US East Coast (NC, SC, GA); Belize GIS & Maps Climate; CO2; Primary Production; Sediment; Stony Coral; Surface & Groundwater Flow
Goulet, T. L., C. B. Cook, and D. Goulet. 2005. Effect of short-term exposure to elevated temperatures and light levels on photosynthesis of different host-symbiont combinations in the Aiptasia pallidal Symbiodinium symbiosis. Limnology and Oceanography 50:1490-1498. 2005 Florida; Bermuda Lab Study Algae; Anemones & Zooanthids; Light; Primary Production; Zooxanthellae
Harrington, L., K. Fabricius, G. Eaglesham, and A. Negri. 2005. Synergistic effects of diuron and sedimentation on photosynthesis and survival of crustose coralline algae. Marine Pollution Bulletin 51:415-427. 2005 Australia Algae; Coralline Algae; Nutrients; Primary Production; Sediment
Hernando, M.P., G.A. Ferreyra. 2005. The effects of UV radiation on photosynthesis in an Antarctic diatom (Thalassiosira sp.): Does vertical mixing matter? Journal of Experimental Marine Biology and Ecology 325:35-45. 2005 Cuba Field Study & Monitoring; Lab Study Algae; Light; Plankton; Primary Production
Jones, R. 2005. The ecotoxicological effects of Photosystem II herbicides on corals. Marine Pollution Bulletin 51:495-506. 2005 Review Agriculture; Algae; Fertilizer & Pesticide Use; Primary Production
Kayanne, H., H. Hata, S. Kudo, H. Yamano, A. Watanabe, Y. Ikeda, K. Nozaki, K. Kato, A. Negishi, and H. Saito. 2005. Seasonal and bleaching-induced changes in coral reef metabolism and CO2 flux. Global Biogeochemical Cycles 19:11-Jan. 2005 Japan; Palau Field Study & Monitoring CO2; Primary Production
Knap, A. H., S. C. Wyers, R. E. Dodge, T. D. Sleeter, H. R. Frith, S. R. Smith, and C. B. Cook. 2005. The effects of chemically and physically dispersed oil on the brain coral diploria strigosa (dana)-a summary review. Page 2303 in 2005 International Oil Spill Conference, IOSC 2005. 2005 Bermuda Review; Field Study & Monitoring; Lab Study Petroleum Spills; Primary Production; Stony Coral
Langdon, C. and M. J. Atkinson. 2005. Effect of elevated pCO2 on photosynthesis and calcification of corals and interactions with seasonal change in temperature/ irradiance and nutrient enrichment. Journal of Geophysical Research C: Oceans 110:16-Jan. 2005 Model Calcium Carbonate Deposition; CO2; Light; Nutrients; Primary Production
Leletkin, V. A. 2005. Nitrogen and photosynthetic function of hermatypic corals. Oxygen exchange of Stylophora pistillata coral under artificial feeding. Zhurnal Obshchei Biologii 66:164-169. 2005 Algae; Nutrients; Primary Production; Zooxanthellae
Lin, Q. and I. A. Mendelssohn. 2005. Dispersants as countermeasures in nearshore oil spills for coastal habitat protection. Pages 10781-10785 in 2005 International Oil Spill Conference, IOSC 2005. 2005 Lobster, Crab, & Shrimp; Petroleum Spills; Primary Production; Wetlands
Lugomela, C., E. Soderback, and M. Bjork. 2005. Photosynthesis rates in cyanobacteria-dominated sub-tidal biofilms near Zanzibar, Tanzania. Estuarine Coastal and Shelf Science 63:439-446. 2005 Tanzania Index or Indicator Cyanobacteria; Microorganisms; Primary Production
McClanahan, T. R. and N. A. J. Graham. 2005. Recovery trajectories of coral reef fish assemblages within Kenyan marine protected areas. Marine Ecology Progress Series 294:241-248. 2005 Kenya Algae; Fish; Marine Protected Areas; Primary Production
McMahon, K., S. B. Nash, G. Eaglesham, J. F. Muller, N. C. Duke, and S. Winderlich. 2005. Herbicide contamination and the potential impact to seagrass meadows in Hervey Bay, Queensland, Australia. Marine Pollution Bulletin 51:325-334. 2005 Australia Fertilizer & Pesticide Use; Primary Production; Seagrasses; Sediment; Surface & Groundwater Flow
Nakamura, T., R. Van Woesik, and H. Yamasaki. 2005. Photoinhibition of photosynthesis is reduced by water flow in the reef-building coral Acropora digitifera. Marine Ecology Progress Series 301:109-118. 2005 Field Study & Monitoring; Lab Study Algae; Light; Primary Production; Seawater Flow; Stony Coral
Negri, A., C. Vollhardt, C. Humphrey, A. Heyward, R. Jones, G. Eaglesham, and K. Fabricius. 2005. Effects of the herbicide diuron on the early life history stages of coral. Marine Pollution Bulletin 51:370-383. 2005 Lab Study Fertilizer & Pesticide Use; Primary Production; Stony Coral
Omata, T., A. Suzuki, H. Kawahat, and M. Okamoto. 2005. Annual fluctuation in the stable carbon isotope ratio of coral skeletons: The relative intensities of kinetic and metabolic isotope effects. Geochimica et Cosmochimica Acta 69:3007-3016. 2005 Model Climate; Primary Production; Salinity; Stony Coral
Raja, R., P. K. Saraswati, K. Rogers, and K. Iwao. 2005. Magnesium and strontium compositions of recent symbiont-bearing benthic foraminifera. Marine Micropaleontology 58:31-44. 2005 Indian Ocean; India; Japan Climate; Nutrients; Plankton; Primary Production
Ralph, P. J. and R. Gademann. 2005. Rapid light curves: A powerful tool to assess photosynthetic activity. Aquatic Botany 82:222-237. 2005 Model; Decision Support Frameworks & Tools Primary Production; Seagrasses
Ralph, P. J., U. Schreiber, R. Gademann, M. Kuhl, and A. W. D. Larkum. 2005. Coral photobiology studied with a new imaging pulse amplitude modulated fluorometer. Journal of Phycology 41:335-342. 2005 Light; Primary Production; Stony Coral
Shick, J. M., C. Ferrier-Pages, R. Grover, and D. Allemand. 2005. Effects of starvation, ammonium concentration, and photosynthesis on the UV-dependent accumulation of mycosporine-like amino acids (MAAs) in the coral Stylophora pistillata. Marine Ecology Progress Series 295:135-156. 2005 Light; Primary Production; Special Use Permitting; Stony Coral; Sunscreen Use; Zooxanthellae
Smith, D. J., D. J. Suggett, and N. R. Baker. 2005. Is photoinhibition of zooxanthellae photosynthesis the primary cause of thermal bleaching in corals? Global Change Biology 11:11-Jan. 2005 Review Primary Production; Zooxanthellae
Sunda, W. G., R. W. Litaker, D. R. Hardison, and P. A. Tester. 2005. Dimethylsulfoniopropionate (DMSP) and its relation to algal pigments in diverse waters of the Belize coastal lagoon and barrier reef system. Marine Ecology Progress Series 287:22-Nov. 2005 South & Central America; Belize Index or Indicator Cyanobacteria; Mangroves; Microorganisms; Nutrients; Plankton; Primary Production
Swart, P. K., A. Szmant, J. W. Porter, R. E. Dodge, J. I. Tougas, and J. R. Southam. 2005. The isotopic composition of respired carbon dioxide in scleractinian corals: Implications for cycling of organic carbon in corals. Geochimica et Cosmochimica Acta 69:1495-1509. 2005 Florida; Cuba CO2; Primary Production; Stony Coral; Zooxanthellae
Ulstrup, K. E., R. Hill, and P. J. Ralph. 2005. Photosynthetic impact of hypoxia on in hospite zooxanthellae in the scleractinian coral Pocillopora damicornis. Marine Ecology Progress Series 286:125-132. 2005 Primary Production; Seawater Flow; Stony Coral; Zooxanthellae
Wild, C., M. Rasheed, C. Jantzen, P. Cook, U. Struck, M. Huettel, and A. Boetius. 2005. Benthic metabolism and degradation of natural particulate organic matter in carbonate and silicate reef sands of the northern Red Sea. Marine Ecology Progress Series 298:69-78. 2005 Primary Production; Sediment; Zooxanthellae
Yanez-Arancibia, A. and J. W. Day. 2005. Environmental sub-regions in the Gulf of Mexico coastal zone: The ecosystem approach as an integrated management tool. Ocean and Coastal Management 47:727-757. 2005 Global; South & Central America; Florida; Caribbean; Mexico Decision Support Frameworks & Tools Apex Fish Predators; Cultural Policies; Discharges; Primary Production; Surface & Groundwater Flow; Wetlands
[No author name available]. 2004. Proceedings of SPIE - Remote Sensing of the Ocean and Sea Ice 2004. Proceedings of SPIE - The International Society for Optical Engineering 5569. 2004 Taiwan Field Study & Monitoring; Remote Sensing Petroleum Spills; Primary Production
Anthony, K. R. N. and S. R. Connolly. 2004. Environmental limits to growth: Physiological niche boundaries of corals along turbidity-light gradients. Oecologia 141:373-384. 2004 Light; Primary Production; Sediment; Stony Coral
Arias-Gonzalez, J.E., E. Nunez-Lara, C. Gonzalez-Salas, and R. Galzin. 2004. Trophic models for investigation of fishing effect on coral reef ecosystems. Ecological Modelling 172:197-212. 2004 South & Central America; Caribbean Field Study & Monitoring; Model; Index or Indicator Finfish Harvest; Fish; Marine Protected Areas; Primary Production
Bhagooli, R. and M. Hidaka. 2004. Release of zooxanthellae with intact photosynthetic activity by the coral Galaxae fascicularis in response to high temperature stress. Marine Biology 145:329-337. 2004 Discharges; Primary Production; Stony Coral; Zooxanthellae
Bozec, Y-M., D. Gascuel, M. Kulbicki. 2004. Trophic model of lagoonal communities in a large open atoll (Uvea, Loyalty islands, New Caledonia). Aquatic Living Resource 17:151-162. 2004 New Caledonia Model Plankton; Primary Production
Chen, M.-C., Y.-M. Cheng, M.-C. Hong, and L.-S. Fang. 2004. Molecular cloning of Rab5 (ApRab5) in Aiptasia pulchella and its retention in phagosomes harboring live zooxanthellae. Biochemical and Biophysical Research Communications 324:1024-1033. 2004 Algae; Anemones & Zooanthids; Primary Production; Surface & Groundwater Flow; Zooxanthellae
Cohen, A. L. and R. A. Sohn. 2004. Tidal modulation of Sr/Ca ratios in a Pacific reef coral. Geophysical Research Letters 31. 2004 US Pacific & Hawaii Decision Support Frameworks & Tools Light; Primary Production
Cosgrove, J., D. Walker, P. Morrison, and K. Hillman. 2004. Periphyton indicate effects of wastewater discharge in the near-coastal zone, Perth (Western Australia). Estuarine Coastal and Shelf Science 61:331-338. 2004 Australia Field Study & Monitoring; Lab Study; Index or Indicator Discharges; Nutrients; Plankton; Primary Production; Wastewater Discharge
Dove, S. 2004. Scleractinian corals with photoprotective host pigments are hypersensitive to thermal bleaching. Marine Ecology Progress Series 272:99-116. 2004 Australia Light; Primary Production; Sea Temperatures; Stony Coral
Franklin, D. J., O. Hoegh-Guldberg, R. J. Jones, and J. A. Berges. 2004. Cell death and degeneration in the symbiotic dinoflagellates of the coral Stylophora pistillata during bleaching. Marine Ecology Progress Series 272:117-130. 2004 Global; Australia Algae; Climate; Primary Production; Sea Temperatures; Stony Coral
Gardinali, P. R., M. D. Plasencia, and C. Maxey. 2004. Occurrence and transport of Irgarol 1051 and its major metabolite in coastal waters from South Florida. Marine Pollution Bulletin 49:1072-1083. 2004 Florida Model Algae; Docks & Marinas; Fertilizer & Pesticide Use; Point Source Discharges; Ports & Harbors; Primary Production; Seagrasses; Surface & Groundwater Flow
Goldshmid, R., R. Holzman, D. Weihs, and A. Genin. 2004. Aeration of corals by sleep-swimming fish. Limnology and Oceanography 49:1832-1839. 2004 Lab Study Algae; Fish; Primary Production; Stony Coral
Goreau, T. J., J. M. Cervino, and R. Pollina. 2004. Increased zooxanthellae numbers and mitotic index in electrically stimulated corals. Symbiosis 37:107-120. 2004 Global; Indonesia Index or Indicator; Decision Support Frameworks & Tools Algae; CO2; Nutrients; Primary Production; Sediment; Special Use Permitting; Stony Coral; Zooxanthellae
Grant, A. J., T. Starke-Peterkovic, K. J. T. Withers, and R. Hinde. 2004. Aposymbiotic Plesiastrea versipora continues to produce cell-signalling molecules that regulate the carbon metabolism of symbiotic algae. Comparative Biochemistry and Physiology Part A 138:253-259. 2004 Australia Algae; Primary Production; Stony Coral
Grottoli, A. G., L. J. Rodrigues, and C. Juarez. 2004. Lipids and stable carbon isotopes in two species of Hawaiian corals, Porites compressa and Montipora verrucosa, following a bleaching event. Marine Biology 145:621-631. 2004 Global; US Pacific & Hawaii Light; Primary Production; Stony Coral
Grunwald, B. and M. Kuhl. 2004. A system for imaging variable chlorophyll fluorescence of aquatic phototrophs. Ophelia 58:79-89. 2004 GIS & Maps Algae; Cyanobacteria; Environmental Monitoring, Mapping, & Scientific Research; Microorganisms; Primary Production
Guidetti, P., S. Fraschetti, A. Terlizzi, and F. Boero. 2004. Effects of desertification caused by Lithophaga lithophaga (Mollusca) fishery on littoral fish assemblages along rocky coasts of southeastern Italy. Conservation Biology 18:1417-1423. 2004 Algae; Complex Habitat & Resources; Fish; Fishing Sector; Molluscs; Primary Production; Small Herbivorous Fish
Hill, R., U. Schreiber, R. Gademann, A. W. D. Larkum, M. Kuhl, and P. J. Ralph. 2004. Spatial heterogeneity of photosynthesis and the effect of temperature-induced bleaching conditions in three species of corals. Marine Biology 144:633-640. 2004 Light; Primary Production; Stony Coral
Hohenegger, J. 2004. Depth coenoclines and environmental considerations of Western Pacific larger foraminifera. Journal of Foraminiferal Research 34:Sep-33. 2004 US Pacific & Hawaii Algae; Climate; Nutrients; Primary Production; Sediment; Special Use Permitting; Substrate; Water Depth & Sea Level
Honisch, B., N. G. Hemming, A. G. Grottoli, A. Amat, G. N. Hanson, and J. Bijma. 2004. Assessing scleractinian corals as recorders for paleo-pH: Empirical calibration and vital effects. Geochimica et Cosmochimica Acta 68:3675-3685. 2004 Lab Study Plankton; Primary Production; Stony Coral
Houlbreque, F., E. Tambutte, C. Richard, and C. Ferrier-Pages. 2004. Importance of a micro-diet for scleractinian corals. Marine Ecology Progress Series 282:151-160. 2004 Cuba Cyanobacteria; Microorganisms; Nutrients; Plankton; Primary Production; Stony Coral
Houlbreque, F., E. Tambutte, D. Allemand, and C. Ferrier-Pages. 2004. Interactions between zooplankton feeding, photosynthesis and skeletal growth in the scleractinian coral Stylophora pistillata. Journal of Experimental Biology 207:1461-1469. 2004 Cuba Calcium Carbonate Deposition; Plankton; Primary Production; Stony Coral
Jones, R. J. 2004. Testing the 'photoinhibition' model of coral bleaching using chemical inhibitors. Marine Ecology Progress Series 284:133-145. 2004 Model Algae; Fertilizer & Pesticide Use; Light; Primary Production; Stony Coral
Leggat, W., S. Whitney, and D. Yellowlees. 2004. Is coral bleaching due to the instability of the zooxanthellae dark reactions? Symbiosis 37:137-153. 2004 Global Anemones & Zooanthids; Primary Production; Sponges; Zooxanthellae
Levy, O., Z. Dubinsky, K. Schneider, Y. Achituv, D. Zakai, and M. Y. Gorbunov. 2004. Diurnal hysteresis in coral photosynthesis. Marine Ecology Progress Series 268:105-117. 2004 South & Central America; US Pacific & Hawaii; Cuba; Caribbean Algae; Plankton; Primary Production; Stony Coral
Nakamura, E., Y. Yokohama, and J. Tanaka. 2004. Photosynthetic activity of a temperate coral Acropora pruinosa (Scleractinia, Anthozoa) with symbiotic algae in Japan. Phycological Research 52:38-44. 2004 Japan Algae; Light; Primary Production; Stony Coral; Zooxanthellae
Nishihara, G. N., R. Terada, and T. Noro. 2004. Photosynthesis and growth rates of Laurencia brongniartii J. Agardh (Rhodophyta, Ceramiales) in preparation for cultivation. Journal of Applied Phycology 16:303-308. 2004 Japan Light; Primary Production
Okey, T.A., G.A. Vargo, S. Mackinson, M. Vasconcellos, B. Mahmoudie, and C.A. Meyer. 2004. Simulating community effects of sea floor shading by plankton blooms over the West Florida Shelf. Ecological Modelling 172:339-359. 2004 Florida Model Complex Habitat & Resources; Invertebrates; Light; Marine Birds; Nutrients; Plankton; Primary Production
Parrish, F. A. and R. C. Boland. 2004. Habitat and reef-fish assemblages of banks in the Northwestern Hawaiian Islands. Marine Biology 144:1065-1073. 2004 US Pacific & Hawaii Field Study & Monitoring Apex Fish Predators; Finfish Harvest; Fish; Piscivorous Fish; Primary Production
Piniak, G. A. and F. Lipschultz. 2004. Effects of nutritional history on nitrogen assimilation in congeneric temperate and tropical scleractinian corals. Marine Biology 145:1085-1096. 2004 Nutrients; Primary Production; Stony Coral; Zooxanthellae
Porat, D. and N. E. Chadwick-Furman. 2004. Effects of anemonefish on giant sea anemones: Expansion behavior, growth, and survival. Hydrobiologia 513-520. 2004 Anemones & Zooanthids; Corallivorous Fish; Fish; Primary Production
Rasheed, M., C. Wild, U. Franke, and M. Huettel. 2004. Benthic photosynthesis and oxygen consumption in permeable carbonate sediments at Heron Island, Great Barrier Reef, Australia. Estuarine Coastal and Shelf Science 59:139-150. 2004 Australia Lab Study Nutrients; Primary Production; Sediment
Rosenberg, E. and L. Falkovitz. 2004. The Vibrio shiloi/Oculina patagonica model system of coral bleaching. Annual Review of Microbiology 58:143-159. 2004 Model Marine Worms; Microorganisms; Pathogens; Primary Production; Stony Coral; Zooxanthellae
Serisawa, Y., Y. Yokohama, Y. Aruga, and A. Bellgrove. 2004. Photosynthetic performance of transplanted ecotypes of Ecklonia cava (Laminariales, Phaeophyta). Journal of Applied Phycology 16:227-235. 2004 Japan Index or Indicator Artificial Habitat; Primary Production
Stambler, N. and Z. Dubinsky. 2004. Stress effects on metabolism and photosynthesis of hermatypic corals. Pages 195-215 in E. Rosenberg and Y. Loya, editors. Coral health and disease. Springer, Berlin, Germany. 2004 Nutrients; Pathogens; Primary Production; Sediment; Zooxanthellae
Takahashi, S., T. Nakamura, M. Sakamizu, R. Van Woesik, and H. Yamasaki. 2004. Repair Machinery of Symbiotic Photosynthesis as the Primary Target of Heat Stress for Reef-Building Corals. Plant and Cell Physiology 45:251-255. 2004 Field Study & Monitoring Algae; Primary Production; Stony Coral; Zooxanthellae
Wild, C., M. Huettel, A. Klueter, S. G. Kremb, M. Y. M. Rasheed, and B. B. Jorgensen. 2004. Coral mucus functions as an energy carrier and particle trap in the reef ecosystem. Nature 428:66-70. 2004 Australia Algae; Nutrients; Primary Production; Sediment; Stony Coral; Zooxanthellae
Yakovleva, I. and M. Hidaka. 2004. Different effects of high temperature acclimation on bleaching-susceptible and tolerant corals. Symbiosis 37:87-105. 2004 Japan Primary Production; Stony Coral; Zooxanthellae
Yentsch, C. S., C. M. Yentsch, D. A. Phinney, B. E. Lapointe, and S. F. W. Yentsch. 2004. The odyssey of new production. Journal of Experimental Marine Biology and Ecology 300:15-30. 2004 Florida; Bahamas Lab Study; Remote Sensing Algae; Nutrients; Primary Production; Surface & Groundwater Flow; Zooxanthellae
Adkins, J. F., E. A. Boyle, W. B. Curry, and A. Lutringer. 2003. Stable isotopes in deep-sea corals and a new mechanism for \vital effects\"". Geochimica et Cosmochimica Acta 67:1129-1143. 2003 Calcium Carbonate Deposition; Climate; Primary Production
Al-Horani, F. A., S. M. Al-Moghrabi, and D. De Beer. 2003. Microsensor study of photosynthesis and calcification in the scleractinian coral, Galaxea fascicularis: Active internal carbon cycle. Journal of Experimental Marine Biology and Ecology 288:15-Jan. 2003 Plankton; Primary Production; Stony Coral
Al-Horani, F. A., S. M. Al-Moghrabi, and D. De Beer. 2003. The mechanism of calcification and its relation to photosynthesis and respiration in the scleractinian coral Galaxea fascicularis. Marine Biology 142:419-426. 2003 Cuba Calcium Carbonate Deposition; Primary Production; Stony Coral
Anthony, K. R. N. and O. Hoegh-Guldberg. 2003. Kinetics of photoacclimation in corals. Oecologia 134:23-31. 2003 Model Light; Plankton; Primary Production; Stony Coral; Zooxanthellae
Anthony, K. R. N. and O. Hoegh-Guldberg. 2003. Variation in coral photosynthesis, respiration and growth characteristics in contrasting light microhabitats: An analogue to plants in forest gaps and understoreys? Functional Ecology 17:246-259. 2003 Light; Primary Production
Arp, G., A. Reimer, and J. Reitner. 2003. Microbialite formation in seawater of increased alkalinity, Satonda Crater Lake, Indonesia. Journal of Sedimentary Research 73:105-127. 2003 Indonesia Model Algae; Calcium Carbonate Deposition; CO2; Cyanobacteria; Microorganisms; Primary Production; Sediment; Sponges
Banin, E., D. Vassilakos, E. Orr, R. J. Martinez, and E. Rosenberg. 2003. Superoxide dismutase is a virulence factor produced by the coral bleaching pathogen Vibrio shiloi. Current Microbiology 46:418-422. 2003 Pathogens; Primary Production; Zooxanthellae
Beach, K., L. Walters, H. Borgeas, C. Smith, J. Coyer, and P. Vroom. 2003. The impact of Dictyota spp. on Halimeda populations of Conch Reef, Florida Keys. Journal of Experimental Marine Biology and Ecology 297:141-159. 2003 Florida Algae; Calcareous Macroalgae; Fleshy Macroalgae; Octocoral; Primary Production; Sponges; Stony Coral
Beach, K., L. Walters, P. Vroom, C. Smith, J. Coyer, and C. Hunter. 2003. Variability in the ecophysiology of Halimeda spp. (Chlorophyta, bryopsidales) on Conch Reef, Florida Keys, USA. Journal of Phycology 39:633-643. 2003 Florida Field Study & Monitoring Calcareous Macroalgae; Light; Nutrients; Primary Production
Chen, M.-C., Y.-M. Cheng, P.-J. Sung, C.-E. Kuo, and L.-S. Fang. 2003. Molecular identification of Rab7 (ApRab7) in Aiptasia pulchella and its exclusion from phagosomes harboring zooxanthellae. Biochemical and Biophysical Research Communications 308:586-595. 2003 Algae; Anemones & Zooanthids; Primary Production; Zooxanthellae
Chisholm, J. R. M. 2003. Primary productivity of reef-building crustose coralline algae. Limnology and Oceanography 48:1376-1387. 2003 Australia Field Study & Monitoring; Lab Study; Model Algae; Coralline Algae; Light; Primary Production
Depczynski, M. and D. R. Bellwood. 2003. The role of cryptobenthic reef fishes in coral reef trophodynamics. Marine Ecology Progress Series 256:183-191. 2003 Australia Fish; Primary Production
Dizon, R. M. and H. T. Yap. 2003. Metabolic changes and compositional shifts in nutrient-enriched tropical reef sediment communities [Cambios metabolicos y de composicion en comunidades de sedimentos de arrecife tropical enriquecidos con nutrientes]. Scientia Marina 67:117-127. 2003 Philippines Algae; Cyanobacteria; Marine Worms; Microorganisms; Nutrients; Primary Production; Sediment
Edmundson, J. A., T. M. Willette, J. M. Edmundson, D. C. Schmidt, S. R. Carlson, B. G. Bue, and K. E. Tarbox. 2003. Sockeye Salmon Overescapement (Kenai River Component). Exxon Valdez Oil Spill Restoration Project Final Report. 2003 Commercial Fisheries; Fishing Sector; Non-point Source Runoff; Petroleum Spills; Plankton; Primary Production; Surface & Groundwater Flow
Fu, F.-X. and P. R. F. Bell. 2003. Growth, N2 fixation and photosynthesis in a cyanobacterium, Trichodesmium sp., under Fe stress. Biotechnology Letters 25:645-649. 2003 Australia Primary Production
Grant, A. J., D. A. Trautman, S. Frankland, and R. Hinde. 2003. A symbiosome membrane is not required for the actions of two host signalling compounds regulating photosynthesis in symbiotic algae isolated from cnidarians. Comparative Biochemistry and Physiology Part A 135:337-345. 2003 Cuba Algae; Anemones & Zooanthids; Primary Production; Stony Coral
Grant, A. J., K. Graham, S. Frankland, and R. Hinde. 2003. Effect of copper on algal-host interactions in the symbiotic coral Plesiastrea versipora. Plant Physiology and Biochemistry 41:383-390. 2003 Algae; Primary Production; Stony Coral
Gross, E. M. 2003. Allelopathy of aquatic autotrophs. Critical Reviews in Plant Sciences 22:313-339. 2003 Field Study & Monitoring; Lab Study Algae; Cyanobacteria; Microorganisms; Nutrients; Plankton; Primary Production; Substrate
Houlbreque, F., E. Tambutte, and C. Ferrier-Pages. 2003. Effect of zooplankton availability on the rates of photosynthesis, and tissue and skeletal growth in the scleractinian coral Stylophora pistillata. Journal of Experimental Marine Biology and Ecology 296:145-166. 2003 Light; Plankton; Primary Production; Stony Coral; Zooxanthellae
Jones, R. J. and A. J. Heyward. 2003. The effects of Produced Formation Water (PFW) on coral and isolated symbiotic dinoflagellates of coral. Marine and Freshwater Research 54:153-162. 2003 Australia Field Study & Monitoring Algae; Oil & Gas Industry; Oil & Gas Rigs; Primary Production; Toxics
Kerswell, A. P. and R. J. Jones. 2003. Effects of hypo-osmosis on the coral Stylophora pistillata: Nature and cause of 'low-salinity bleaching'. Marine Ecology Progress Series 253:145-154. 2003 Algae; Primary Production; Salinity; Stony Coral
Langdon, C., W. S. Broecker, D. E. Hammond, E. Glenn, K. Fitzsimmons, S. G. Nelson, T.-H. Peng, I. Hajdas, and G. Bonani. 2003. Effect of elevated CO2 on the community metabolism of an experimental coral beef. Global Biogeochemical Cycles 17:1-Nov. 2003 Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; Carbon Storage & Cycling; CO2; Light; Nutrients; Primary Production; Salinity
Larkum, A. W. D., E.-M.W. Koch, and M. Kuhl. 2003. Diffusive boundary layers and photosynthesis of the epilithic algal community of coral reefs. Marine Biology 142:1073-1082. 2003 Australia CO2; Light; Primary Production; Skeletal Coral
Lemmens, S. 2003. Periphyton collectors as a tool to measure environmental performance of ocean outlets. Water Science and Technology 47:125-131. 2003 Australia Field Study & Monitoring; Model; Decision Support Frameworks & Tools Algae; Artificial Habitat; Calcium Carbonate Deposition; Chemical Use Regulations; Collaboration & Partnering; Discharges; Environmental Monitoring, Mapping, & Scientific Research; Fertilizer & Pesticide Use; Microorganisms; Nutrients; Primary Production; Seagrasses; Wastewater Discharge
Magoshi, J., T. Tanaka, H. Sasaki, M. Kobayashi, Y. Magoshi, H. Tsuda, M. A. Becker, S.-I. Inoue, and K. Ishimaru. 2003. Uptake of atmospheric carbon dioxide into silk fiber by silkworms. Biomacromolecules 4:778-782. 2003 Model CO2; Primary Production
Maier, C., J. Patzold, and R. P. M. Bak. 2003. The skeletal isotopic composition as an indicator of ecological and physiological plasticity in the coral genus Madracis. Coral Reefs 22:370-380. 2003 Index or Indicator Primary Production; Stony Coral
Marshall, A. T. and P. L. Clode. 2003. Light-regulated Ca2+ uptake and O2 secretion at the surface of a scleractinian coral Galaxea fascicularis. Comparative Biochemistry and Physiology Part A 136:417-426. 2003 Primary Production; Stony Coral; Zooxanthellae
Mazel, C. H., M. P. Lesser, M. Y. Gorbunov, T. M. Barry, J. H. Farrell, K. D. Wyman, and P. G. Falkowski. 2003. Green-fluorescent proteins in Caribbean corals. Limnology and Oceanography 48:402-411. 2003 South & Central America; US Pacific & Hawaii; Caribbean Lab Study Light; Primary Production; Stony Coral; Zooxanthellae
Nordemar, I., M. Nystrom, and R. Dizon. 2003. Effects of elevated seawater temperature and nitrate enrichment on the branching coral Porites cylindrica in the absence of particulate food. Marine Biology 142:669-677. 2003 Global Algae; Nutrients; Primary Production; Stony Coral
Oku, H., H. Yamashiro, and K. Onaga. 2003. Lipid biosynthesis from [14C]-glucose in the coral Montipora digitata. Fisheries Science 69:625-631. 2003 Cuba Primary Production; Substrate; Zooxanthellae
Owen, R., A. Knap, N. Ostrander, and K. Carbery. 2003. Comparative acute toxicity of herbicides to photosynthesis of coral zooxanthellae. Bulletin of Environmental Contamination and Toxicology 70:541-548. 2003 Fertilizer & Pesticide Use; Primary Production; Zooxanthellae
Raberg, S., M. Nystrom, M. Eros, P. Plantman. 2003. Impact of the Herbicides 2, 4-D and diuron on the metabolism of the coral Porites Cylindrica. Marine Environmental Research 56:503-514. 2003 Dive, Snorkeling, & Swimming Tourism; Fertilizer & Pesticide Use; Primary Production; Stony Coral
Reynaud, S., N. Leclercq, S. Romaine-Lioud, C. Ferrier-Pages, J. Jaubert, and J.-P. Gattuso. 2003. Interacting effects of CO2 partial pressure and temperature on photosynthesis and calcification in a scleractinian coral. Global Change Biology 9:1660-1668. 2003 Global CO2; Primary Production; Stony Coral
Richardson, L. L. and K. G. Kuta. 2003. Ecological physiology of the black band disease cyanobacterium Phormidium corallyticum. FEMS Microbiology Ecology 43:287-298. 2003 Europe Lab Study Light; Nutrients; Pathogens; Primary Production
Rollon, R. N., E. D. De Ruyter Van Steveninck, and W. Van Vierssen. 2003. Spatio-temporal variation in sexual reproduction of the tropical seagrass Enhalus acoroides (L.f.) Royle in Cape Bolinao, NW Philippines. Aquatic Botany 76:339-354. 2003 US Pacific & Hawaii; Philippines Light; Nutrients; Primary Production; Seagrasses; Water Depth & Sea Level
Saxby, T., W. C. Dennison, and O. Hoegh-Guldberg. 2003. Photosynthetic responses of the coral Montipora digitata to cold temperature stress. Marine Ecology Progress Series 248:85-97. 2003 Global Field Study & Monitoring Climate; Primary Production; Stony Coral
Sebens, K. P., B. Helmuth, E. Carrington, and B. Agius. 2003. Effects of water flow on growth and energetics of the scleractinian coral Agaricia tenuifolia in Belize. Coral Reefs 22:35-47. 2003 South & Central America; Belize Complex Habitat & Resources; Light; Primary Production; Seawater Flow; Stony Coral
Suzuki, A., M. K. Gagan, K. Fabricius, P. J. Isdale, I. Yukino, and H. Kawahata. 2003. Skeletal isotope microprofiles of growth perturbations in Porites corals during the 1997-1998 mass bleaching event. Coral Reefs 22:357-369. 2003 Australia; Japan Primary Production; Stony Coral
Winters, G., Y. Loya, R. Rottgers, and S. Beer. 2003. Photoinhibition in shallow-water colonies of the coral Stylophora pistillata as measured in situ. Limnology and Oceanography 48:1388-1393. 2003 Light; Primary Production
Yates, K. K. and R. B. Halley. 2003. Measuring coral reef community metabolism using new benthic chamber technology. Coral Reefs 22:247-255. 2003 Florida; US Pacific & Hawaii; Cuba Field Study & Monitoring; Decision Support Frameworks & Tools Calcium Carbonate Deposition; Primary Production; Substrate
Cebrian, J. 2002. Variability and control of carbon consumption, export, and accumulation in marine communities. Limnology and Oceanography 47:22-Nov. 2002 Mangroves; Plankton; Primary Production; Seagrasses
Davy, S. K., D. A. Trautman, M. A. Borowitzka, and R. Hinde. 2002. Ammonium excretion by a symbiotic sponge supplies the nitrogen requirements of its rhodophyte partner. Journal of Experimental Biology 205:3505-3511. 2002 Algae; Nutrients; Primary Production; Sponges
Durako, M. J. and J. I. Kunzelman. 2002. Photosynthetic characteristics of Thalassia testudinum measured in situ by pulse-amplitude modulated (PAM) fluorometry: methodological and scale-based considerations. Aquatic Botany 73:173-185. 2002 Dive, Snorkeling, & Swimming Tourism; Light; Primary Production; Seagrasses
Elfwing, T. and M. Tedengren. 2002. Effects of copper and reduced salinity on grazing activity and macroalgae production: A short-term study on a mollusc grazer, Trochus maculatus, and two species of macroalgae in the inner Gulf of Thailand. Marine Biology 140:913-919. 2002 Thailand Index or Indicator Algae; Fleshy Macroalgae; Molluscs; Primary Production; Salinity; Stony Coral
Grottoli, A. G. 2002. Effect of light and brine shrimp on skeletal δ13C in the Hawaiian coral Porites compressa: A tank experiment. Geochimica et Cosmochimica Acta 66:1955-1967. 2002 US Pacific & Hawaii Field Study & Monitoring Light; Lobster, Crab, & Shrimp; Nutrients; Plankton; Primary Production; Stony Coral; Zooxanthellae
Gullstrom, M., M. De La Torre Castro, S. O. Bandeira, M. Bjork, M. Dahlberg, N. Kautsky, P. Ronnback, and M. C. Ohman. 2002. Seagrass ecosystems in the Western Indian Ocean. Ambio 31:588-596. 2002 Indian Ocean; Somalia; Kenya; Tanzania; Mozambique; Comoros; Madagascar; Seychelles; Mauritius; Reunion; India; South Africa; France Review; Field Study & Monitoring Complex Habitat & Resources; Corallivorous Fish; Finfish Harvest; Fishing & Harvesting Management; Fishing Sector; Large Herbivorous Fish; Mangroves; Nutrients; Primary Production; Seagrasses; Sediment
Hata, H., S. Kudo, H. Yamano, N. Kurano, and H. Kayanne. 2002. Organic carbon flux in Shiraho coral reef (Ishigaki Island, Japan). Marine Ecology Progress Series 232:129-140. 2002 Japan Primary Production; Sediment
Kayanne, H., H. Hata, K. Nozaki, K. Kato, A. Negishi, H. Saito, H. Yamano, T. Isamu, H. Kimoto, M. Tsuda, F. Akimoto, K. Kawate, and I. Iwata. 2002. Submergible system to measure seawater pCO2 on a shallow sea floor. Marine Technology Society Journal 36:23-28. 2002 Palau CO2; Primary Production; Salinity
Leclercq, N., J.-P. Gattuso, and J. Jaubert. 2002. Primary production, respiration, and calcification of a coral reef mesocosm under increased CO2 partial pressure. Limnology and Oceanography 47:558-564. 2002 Calcium Carbonate Deposition; CO2; Primary Production; Sediment
Marshall, A. T. and P. L. Clode. 2002. Effect of increased calcium concentration in sea water on calcification and photosynthesis in the scleractinian coral Galaxea fascicularis. Journal of Experimental Biology 205:2107-2113. 2002 Cuba Model Calcium Carbonate Deposition; CO2; Primary Production; Stony Coral; Zooxanthellae
McArthur, C., R. Ferry, and J. Proni. 2002. Development of guidelines for dredged material disposal based on abiotic determinants of coral reef community structure. Pages 1897-1911 in Dredging, Key Technologies for Global Prosperity. 2002 Global Dredging, Draining, & Filling; Primary Production; Sediment
Owen, R., A. Knap, M. Toaspern, and K. Carbery. 2002. Inhibition of coral photosynthesis by the antifouling herbicide Irgarol 1051. Marine Pollution Bulletin 44:623-632. 2002 Florida; US Virgin Islands; Cuba; Bermuda Algae; Docks & Marinas; Fertilizer & Pesticide Use; Light; Primary Production; Special Use Permitting; Zooxanthellae
Perkins, R. G., K. Oxborough, A. R. M. Hanlon, G. J. C. Underwood, and N. R. Baker. 2002. Can chlorophyll fluorescence be used to estimate the rate of photosynthetic electron transport within microphytobenthic biofilms? Marine Ecology Progress Series 228:47-56. 2002 Primary Production
Ralph, P. J., R. Gademann, A. W. D. Larkum, and M. Kuhl. 2002. Spatial heterogeneity in active chlorophyll fluorescence and PSII activity of coral tissues. Marine Biology 141:639-646. 2002 Light; Primary Production; Special Use Permitting; Stony Coral; Zooxanthellae
Reynaud, S., C. Ferrier-Pages, R. Sambrotto, A. Juillet-Leclerc, J. Jaubert, and J.-P. Gattuso. 2002. Effect of feeding on the carbon and oxygen isotopic composition in the tissues and skeleton of the zooxanthellate coral Stylophora pistillata. Marine Ecology Progress Series 238:81-89. 2002 Model Primary Production; Stony Coral; Zooxanthellae
Rosenberg, E. and Y. Ben-Haim. 2002. Microbial diseases of corals and global warming. Environmental Microbiology 4:318-326. 2002 Global Pathogens; Primary Production; Stony Coral; Zooxanthellae
Schreiber, U., R. Gademann, P. Bird, P. J. Ralph, A. W. D. Larkum, and M. Kuhl. 2002. Apparent light requirement for activation of photosynthesis upon rehydration of desiccated beachrock microbial mats. Journal of Phycology 38:125-134. 2002 Australia Algae; Cyanobacteria; Microorganisms; Primary Production
Soreghan, G. S. and M. J. Soreghan. 2002. Atmospheric dust and algal dominance in the late Paleozoic: A hypothesis. Journal of Sedimentary Research 72:457-461. 2002 Nutrients; Primary Production
Stanley, S. M., J. B. Ries, and L. A. Hardie. 2002. Low-magnesium calcite produced by coralline algae in seawater of late cretaceous composition. Proceedings of the National Academy of Sciences of the United States of America 99:15323-15326. 2002 Algae; CO2; Coralline Algae; Primary Production
Suzumura, M., T. Miyajima, H. Hata, Y. Umezawa, H. Kayanne, and I. Koike. 2002. Cycling of phosphorus maintains the production of microphytobenthic communities in carbonate sediments of a coral reef. Limnology and Oceanography 47:771-781. 2002 Cuba; Japan Lab Study Primary Production; Sediment
Underwood, G. J. C. 2002. Adaptations of tropical marine microphytobenthic assemblages along a gradient of light and nutrient availability in Suva Lagoon, Fiji. European Journal of Phycology 37:449-462. 2002 Fiji Climate; Light; Mangroves; Nutrients; Primary Production; Salinity; Seagrasses; Sediment
Vermeij, M. J. A., L. Delvoye, G. Nieuwland, and R. P. M. Bak. 2002. Patterns in fluorescence over a Caribbean reef slope: The coral genus Madracis. Photosynthetica 40:423-429. 2002 South & Central America; Caribbean Field Study & Monitoring; Decision Support Frameworks & Tools Primary Production; Stony Coral
Yentsch, C.S., C.M. Yentsch, J.J. Cullen, B. Lapointe, D.A. Phinney, S.W. Yentsch. 2002. Sunlight and water transparency: cornerstones in coral research. Journal of Experimental Marine Biology and Ecology 268:171-183. 2002 Florida Field Study & Monitoring; Lab Study Light; Nutrients; Pathogens; Primary Production; Sediment; Stony Coral; Zooxanthellae
Alutoin, S., J. Boberg, M. Nystrom, and M. Tedengren. 2001. Effects of the multiple stressors copper and reduced salinity on the metabolism of the hermatypic coral Porites lutea. Marine Environmental Research 52:289-299. 2001 Thailand Primary Production; Salinity; Stony Coral
Banin, E., S. K. Khare, F. Naider, and E. Rosenberg. 2001. Proline-Rich Peptide from the Coral Pathogen Vibrio shiloi That Inhibits Photosynthesis of Zooxanthellae. Applied and Environmental Microbiology 67:1536-1541. 2001 Cuba Algae; Pathogens; Primary Production; Zooxanthellae
Banin, E., T. Israely, M. Fine, Y. Loya, and E. Rosenberg. 2001. Role of endosymbiotic zooxanthellae and coral mucus in the adhesion of the coral-bleaching pathogen Vibrio shiloi to its host. FEMS Microbiology Letters 199:33-37. 2001 Europe Algae; Microorganisms; Pathogens; Primary Production; Zooxanthellae
Cohen, A. L., G. D. Layne, S. R. Hart, and P. S. Lobel. 2001. Kinetic control of skeletal Sr/Ca in a symbiotic coral: Implications for the paleotemperature proxy. Paleoceanography 16:20-26. 2001 Model Calcium Carbonate Deposition; Climate; Primary Production; Stony Coral; Zooxanthellae
Cook, C. B. and S. K. Davy. 2001. Are free amino acids responsible for the 'host factor' effects on symbiotic zooxanthellae in extracts of host tissue? Hydrobiologia 461:71-78. 2001 Algae; Anemones & Zooanthids; Primary Production; Stony Coral; Zooxanthellae
Davy, S. K. and C. B. Cook. 2001. The influence of 'host release factor' on carbon release by zooxanthellae isolated from fed and starved Aiptasia pallida (Verrill). Comparative Biochemistry and Physiology Part A 129:487-494. 2001 Cuba Anemones & Zooanthids; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Diaz, M.C., K. Rutzler. 2001. Sponges: an essential component of caribbean coral reefs. Bulletin of Marine Science 69:535-546. 2001 South & Central America; Belize; Caribbean Field Study & Monitoring Biological Monitoring, Mapping, & Scientific Research; Nutrients; Primary Production; Sponges
Dubinsky, Z. and I. Berman-Frank. 2001. Uncoupling primary production from population growth in photosynthesizing organisms in aquatic ecosystems. Aquatic Science 63:17-Apr. 2001 Algae; Nutrients; Plankton; Primary Production; Zooxanthellae
Edmunds, P., R. Gates, and D. Gleason. 2001. The biology of larvae from the reef coral Porites astreoides, and their response to temperature disturbances. Marine Biology 139:981-989. 2001 Global; Florida; Cuba Model Primary Production; Stony Coral
Enriquez, S., N. Marba, C. M. Duarte, B. I. Van Tussenbroek, and G. Reyes-Zavala. 2001. Effects of seagrass Thalassia testudinum on sediment redox. Marine Ecology Progress Series 219:149-158. 2001 South & Central America; Caribbean; Mexico Primary Production; Seagrasses; Sediment
Ferrier-Pages, C., V. Schoelzke, J. Jaubert, L. Muscatine, and O. Hoegh-Guldberg. 2001. Response of a scleractinian coral, Stylophora pistillata, to iron and nitrate enrichment. Journal of Experimental Marine Biology and Ecology 259:249-261. 2001 Algae; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Fitt, W. K. and C. B. Cook. 2001. Photoacclimation and the effect of the symbiotic environment on the photosynthetic response of symbiotic dinoflagellates in the tropical marine hydroid Myrionema amboinense. Journal of Experimental Marine Biology and Ecology 256:15-31. 2001 Field Study & Monitoring Algae; CO2; Light; Primary Production; Zooxanthellae
Floeter, S. R., R. Z. P. Guimaraes, L. A. Rocha, C. E. L. Ferreira, C. A. Rangel, and J. L. Gasparini. 2001. Geographic variation in reef-fish assemblages along the Brazilian coast. Global Ecology and Biogeography 10:423-431. 2001 US East Coast (NC, SC, GA) Fish; Primary Production
Fonseca, M. S. 2001. Comparative analysis of the functioning of disturbed and undisturbed coral reef and seagrass ecosystems in the Tortugas: phase I- establishing a baseline. Center for Coastal Fisheries and Habitat Research, Beaufort, North Carolina. 2001 Florida GIS & Maps; Remote Sensing Complex Habitat & Resources; Plankton; Primary Production; Resource Use Management; Seagrasses; Sediment; Surface & Groundwater Flow
Gorbunov, M. Y., Z. S. Kolber, M. P. Lesser, and P. G. Falkowaski. 2001. Photosynthesis and photoprotection in symbiotic corals. Limnology and Oceanography 46:75-85. 2001 Cuba Light; Primary Production; Special Use Permitting
Grant, A. J., M. Remond, K. J. T. Withers, and R. Hinde. 2001. Inhibition of algal photosynthesis by a symbiotic coral. Hydrobiologia 461:63-69. 2001 Cuba Algae; Anemones & Zooanthids; Primary Production; Stony Coral
Howe, S. A. and A. T. Marshall. 2001. Thermal compensation of metabolism in the temperate coral, Plesiastrea versipora (Lamarck, 1816). Journal of Experimental Marine Biology and Ecology 259:231-248. 2001 Light; Primary Production
Lesser, M. P. and M. Y. Gorbunov. 2001. Diurnal and bathymetric changes in chlorophyll fluorescence yields of reef corals measured in situ with a fast repetition rate fluorometer. Marine Ecology Progress Series 212:69-77. 2001 Bahamas Field Study & Monitoring Primary Production; Special Use Permitting; Stony Coral; Zooxanthellae
Levy, O., L. Mizrahi, N. E. Chadwick-Furman, and Y. Achituv. 2001. Factors controlling the expansion behavior of Favia favus (Cnidaria: Scleractinia): Effects of light, flow, and planktonic prey. Biological Bulletin 200:118-126. 2001 Light; Plankton; Primary Production; Stony Coral
Lourey, M. J., D. M. Alongi, D. A. J. Ryan, and M. J. Devlin. 2001. Variability of nutrient regeneration rates and nutrient concentrations in surface sediments of the northern Great Barrier Reef shelf. Continental Shelf Research 21:145-155. 2001 Australia Discharges; Nutrients; Plankton; Primary Production; Sediment; Surface & Groundwater Flow
Marubini, F., H. Barnett, C. Langdon, and M. J. Atkinson. 2001. Dependence of calcification on light and carbonate ion concentration for the hermatypic coral Porites compressa. Marine Ecology Progress Series 220:153-162. 2001 Global Lab Study Calcium Carbonate Deposition; CO2; Light; Primary Production; Stony Coral
Muller, P., X.-P. Li, and K. K. Niyogi. 2001. Non-photochemical quenching. A response to excess light energy. Plant Physiology 125:1558-1566. 2001 Primary Production
Nystrom, M., I. Nordemar, and M. Tedengren. 2001. Simultaneous and sequential stress from increased temperature and copper on the metabolism of the hermatypic coral Porites cylindrica. Marine Biology 138:1225-1231. 2001 Index or Indicator Primary Production; Stony Coral
Perez, S. F., C. B. Cook, and W. R. Brooks. 2001. The role of symbiotic dinoflagellates in the temperature-induced bleaching response of the subtropical sea anemone Aiptasia pallida. Journal of Experimental Marine Biology and Ecology 256:14-Jan. 2001 Florida; Cuba; Bermuda Algae; Anemones & Zooanthids; Primary Production; Zooxanthellae
Pomory, C. M. and J. M. Lawrence. 2001. Arm regeneration in the field in Ophiocoma echinata (Echinodermata: Ophiuroidea): Effects on body composition and its potential role in a reef food web. Marine Biology 139:661-670. 2001 Florida; China Field Study & Monitoring Echinoderms; Primary Production
Ralph, P. J., R. Gademann, and A. W. D. Larkum. 2001. Zooxanthellae expelled from bleached corals at 33°C are photosynthetically competent. Marine Ecology Progress Series 220:163-168. 2001 Primary Production; Salinity; Zooxanthellae
Reynaud-Vaganay, S., A. Juillet-Leclerc, J. Jaubert, and J.-P. Gattuso. 2001. Effect of light on skeletal δ13C and δ18O, and interaction with photosynthesis, respiration and calcification in two zooxanthellate scleractinian corals. Palaeogeography, Palaeoclimatology, Palaeoecology 175:393-404. 2001 Lab Study; Model Calcium Carbonate Deposition; CO2; Primary Production; Stony Coral; Zooxanthellae
Rosenqvist, E. 2001. Light acclimation maintains the redox state of the PS II electron acceptor QA within a narrow range over a broad range of light intensities. Photosynthesis Research 70:299-310. 2001 Index or Indicator Light; Primary Production
Shigenaka, G. 2001. Toxicity of Oil to Reef-Building Corals: A spill response perspective, NOAA technical memorandum NOS OR&R 8. 2001 Petroleum Spills; Primary Production; Stony Coral
Small, A. M. and W. H. Adey. 2001. Reef corals, zooxanthellae and free-living algae: A microcosm study that demonstrates synergy between calcification and primary production. Ecological Engineering 16:443-457. 2001 Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; CO2; Primary Production; Stony Coral; Zooxanthellae
Titlyanov, E. A., T. V. Titlyanova, and K. Yamazato. 2001. Formation, growth and photo-acclimation of colonies of the hermatypic coral Galaxea fascicularis under different light conditions. Symbiosis 30:257-274. 2001 Japan; China Algae; Primary Production; Zooxanthellae
Titlyanov, E. A., T. V. Titlyanova, K. Yamazato, and R. Van Woesik. 2001. Photo-acclimation of the hermatypic coral stylophora pistillata while subjected to either starvation or food provisioning. Journal of Experimental Marine Biology and Ecology 257:163-181. 2001 Plankton; Primary Production; Zooxanthellae
Wulff, J. 2001. Assessing and monitoring coral reef sponges: Why and how? Bulletin of Marine Science 69:831-846. 2001 Field Study & Monitoring Nutrients; Plankton; Primary Production; Skeletal Coral; Sponges
Anthony, K. R. N. and K. E. Fabricius. 2000. Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. Journal of Experimental Marine Biology and Ecology 252:221-253. 2000 Light; Primary Production; Sediment; Stony Coral
Anthony, K. R.N. and P. Larcombe. 2000. Coral reefs in turbid waters: sediment-induced stresses in corals and likely mechanisms of adaptation. in Proceedings 9th International Coral Reef Symposium. Bali,(Indonesia). 2000 Light; Primary Production; Sediment
Banin, F., Y. Ben-Haim, T. Israely, Y. Loya, and E. Rosenberg. 2000. Effect of the environment on the bacterial bleaching of corals. Water, Air, and Soil Pollution 123:337-352. 2000 Global Algae; Microorganisms; Pathogens; Primary Production; Zooxanthellae
Bourge, I. and M. Frankignoulle. 2000. Calcification does not stimulate photosynthesis in the zooxanthellate scleractinian coral Stylophora pistillata. Limnology and Oceanography 45:246-250. 2000 Cuba CO2; Primary Production; Stony Coral
de Beer, D., M. Kuhl, N. Stambler, and L. Vaki. 2000. A microsensor study of light enhanced ca2+ uptake and photosynthesis in the reef-building hermatypic coral Favia sp. Marine Ecology Progress Series 194:75-85. 2000 CO2; Primary Production
Ferrier-Pages, C., J.-P. Gattuso, S. Dallot, and J. Jaubert. 2000. Effect of nutrient enrichment on growth and photosynthesis of the zooxanthellate coral Stylophora pistillata. Coral Reefs 19:103-113. 2000 Nutrients; Primary Production
Furla, P., I. Galgani, I. Durand, and D. Allemand. 2000. Sources and mechanisms of inorganic carbon transport for coral calcification and photosynthesis. Journal of Experimental Biology 203:3445-3457. 2000 Calcium Carbonate Deposition; CO2; Primary Production; Stony Coral
Heikoop, J. M., J. J. Dunn, M. J. Risk, H. P. Schwarcz, T. A. McConnaughey, and I. M. Sandeman. 2000. Separation of kinetic and metabolic isotope effects in carbon-13 records preserved in reef coral skeletons. Geochimica et Cosmochimica Acta 64:975-987. 2000 Jamaica Model Light; Primary Production
Huber, M. E. and G. B. K. Baines. 2000. The Coral, Solomon and Bismarck Seas Region. Seas at the millennium - an environmental evaluation - Volume 2 425-446. 2000 Global; US Pacific & Hawaii; Australia; Solomon Islands; Vanuatu; New Caledonia; Papua New Guinea Field Study & Monitoring Agriculture; Biological Monitoring, Mapping, & Scientific Research; Discharges; Echinoderms; Environmental Monitoring, Mapping, & Scientific Research; Finfish Harvest; Fish; Fishing & Harvesting Management; Forestry; Mangroves; Molluscs; Point Source Discharges; Primary Production; Resource Use Management; Seagrasses; Sediment; Wetlands
Jones, R. J., S. Ward, A. Y. Amri, and O. Hoegh-Guldberg. 2000. Changes in quantum efficiency of Photosystem II of symbiotic dinoflagellates of corals after heat stress, and of bleached corals sampled after the 1998 Great Barrier Reef mass bleaching event. Marine and Freshwater Research 51:63-71. 2000 Australia Field Study & Monitoring; Lab Study Algae; Primary Production
Kawahata, H., I. Yukino, and A. Suzuki. 2000. Terrestrial influences on the Shiraho fringing reef, Ishigaki Island, Japan: High carbon input relative to phosphate. Coral Reefs 19:172-178. 2000 Japan CO2; Nutrients; Primary Production; Surface & Groundwater Flow
Kuta, K. 2000. Black band disease of corals: Ecology and physiology of Phormidium corallyticum. Florida International University, Miami. 2000 Florida Field Study & Monitoring Nutrients; Octocoral; Pathogens; Primary Production; Stony Coral; Substrate; Water Depth & Sea Level
Leggat, W., T. A. V. Rees, and D. Yellowlees. 2000. Meeting the photosynthetic demand for inorganic carbon in an alga-invertebrate association: Preferential use of CO2 by symbionts in the giant clam Tridacna gigas. Proceedings of the Royal Society B 267:523-529. 2000 CO2; Light; Primary Production; Zooxanthellae
Leletkin, V. A. 2000. The Energy Budget of Coral Polyps. Russian Journal of Marine Biology 26:389-398. 2000 Model Algae; Primary Production; Zooxanthellae
Lesser, M. P. 2000. Depth-dependent photoacclimatization to solar ultraviolet radiation in the Caribbean coral Montastraea faveolata. Marine Ecology Progress Series 192:137-151. 2000 Global; South & Central America; Florida; Caribbean Light; Primary Production; Stony Coral
Lesser, M. P., C. Mazel, D. Phinney, and C. S. Yentsch. 2000. Light absorption and utilization by colonies of the congeneric hermatypic corals Montastraea faveolata and Montastraea cavernosa. Limnology and Oceanography 45:76-86. 2000 South & Central America; Florida; Bahamas; Caribbean Field Study & Monitoring; Index or Indicator Light; Primary Production; Stony Coral; Zooxanthellae
McConnaughey, T. A., W. H. Adey, and A. M. Small. 2000. Community and environmental influences on reef coral calcification. Limnology and Oceanography 45:1667-1671. 2000 Algae; CO2; Nutrients; Primary Production
Ottosen, C.-O. and J. Mentz. 2000. Biomass accumulation and photosynthesis of ornamentals in elevated CO2 conditions. Gartenbauwissenschaft 65:35-39. 2000 CO2; Primary Production
Payri, C. E. 2000. Primary production and calcification of coral reef benthic algae [Production primaire et calcification des algues benthiques en milieu corallien]. Oceanis 26:427-463. 2000 Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; Fleshy Macroalgae; Nutrients; Plankton; Primary Production; Seagrasses; Sediment; Zooxanthellae
Penchaszadeh, P. E., C. A. Leon, H. Alvarez, D. Bone, P. Castellano, M. M. Castillo, Y. Diaz, M. P. Garcia, M. Lemus, F. Losada, A. Martin, P. Miloslavich, C. Paredes, D. Perez, M. Sebastiani, D. Stecconi, V. Roa, and A. Villamizar. 2000. Venezuela. Seas at the millennium - an environmental evaluation - Volume 1 643-661. 2000 South & Central America; US East Coast (NC, SC, GA); Atlantic Ocean; Venezuela; Caribbean Beaches & Nature Parks; Bivalves; Discharge Limitations; Discharges; Fishing Sector; Mangroves; Molluscs; Nutrients; Primary Production; Salinity; Seagrasses; Special Use Permitting; Surface & Groundwater Flow
Sakami, T. 2000. Effects of temperature, irradiance, salinity and inorganic nitrogen concentration on coral zooxanthellae in culture. Fisheries Science 66:1006-1013. 2000 Light; Nutrients; Primary Production; Salinity; Stony Coral; Zooxanthellae
Salih, A., A. Larkum, G. Cox, M. Kuhl, and O. Hoegh-Guldberg. 2000. Fluorescent pigments in corals are photoprotective. Nature 408:850-853. 2000 Light; Primary Production; Stony Coral
Scott, L. C., J. W. Boland, K. S. Edyvane, and G. K. Jones. 2000. Development of a seagrass-fish habitat model - I: A seagrass residency index for economically important species. Environmetrics 11:541-552. 2000 Australia Model; Index or Indicator Fish; Fishing Sector; Molluscs; Monetary Valuation; Primary Production; Seagrasses; Sediment
Sheppard, C. R. C. 2000. The Red Sea. Seas at the millennium - an environmental evaluation - Volume 2 35-45. 2000 Indian Ocean; India Algae; Finfish Harvest; Fishing Sector; Fleshy Macroalgae; Mangroves; Nutrients; Primary Production; Seagrasses; Sediment; Sewage Treatment; Special Use Permitting; Substrate; Surface & Groundwater Flow; Trawling & Fishing Gear Damage; Waste Management Policies
Titlyanov, E. A., J. Tsukahara, T. V. Titlyanova, V. A. Leletkin, R. Van Woesik, and K. Yamazato. 2000. Zooxanthellae population density and physiological state of the coral Stylophora pistillata during starvation and osmotic shock. Symbiosis 28:303-322. 2000 Primary Production; Special Use Permitting; Zooxanthellae
Titlyanov, E. A., V. A. Leletkin, and Z. Dubinsky. 2000. Autotrophy and predation in the hermatypic coral Stylophora pistillata in different light habitats. Symbiosis 29:263-281. 2000 Cuba Field Study & Monitoring Algae; Nutrients; Plankton; Primary Production; Zooxanthellae
Ambariyanto, and O. Hoegh-Guldberg. 1999. Influence of field-based nutrient enrichment on the photobiology of the giant clam Tridacna maxima. Marine Biology 133:659-664. 1999 Field Study & Monitoring Nutrients; Primary Production
Babcock, R. C., S. Kelly, N. T. Shears, J. W. Walker, and T. J. Willis. 1999. Changes in community structure in temperate marine reserves. Marine Ecology Progress Series 189:125-134. 1999 Decision Support Frameworks & Tools Finfish Harvest; Fish; Lobster, Crab, & Shrimp; Marine Protected Areas; Primary Production; Sea Urchins
Ben-Haim, Y., E. Banim, A. Kushmaro, Y. Loya, and E. Rosenberg. 1999. Inhibition of photosynthesis and bleaching of zooxanthellae by the coral pathogen Vibrio shiloi. Environmental Microbiology 1:223-229. 1999 Algae; Pathogens; Primary Production; Zooxanthellae
Clavier, J. and C. Garrigue. 1999. Annual sediment primary production and respiration in a large coral reef lagoon (SW New Caledonia). Marine Ecology Progress Series 191:79-89. 1999 New Caledonia Light; Primary Production; Sediment
Dizon, R. M. and H. T. Yap. 1999. Short-term responses of coral reef microphytobenthic communities to inorganic nutrient loading. Limnology and Oceanography 44:1259-1267. 1999 Light; Nutrients; Primary Production; Sediment
Downing, J. A., M. McClain, R. Twilley, J. M. Melack, J. Elser, N. N. Rabalais, W. M. Lewis Jr., R. E. Turner, J. Corredor, D. Soto, A. Yanez-Arancibia, J. A. Kopaska, and R. W. Howarth. 1999. The impact of accelerating land-use change on the N-cycle of tropical aquatic ecosystems: Current conditions and projected changes. Biogeochemistry 46:109-148. 1999 Mangroves; Nutrients; Primary Production; Surface & Groundwater Flow
Erftemeijer, P. L. A. and J. Stapel. 1999. Primary production of deep-water Halophila ovalis meadows. Aquatic Botany 65:71-82. 1999 Cuba; Indonesia Index or Indicator Primary Production; Seagrasses; Sediment
Ferrier-Pages, C., J.-P. Gattuso, and J. Jaubert. 1999. Effect of small variations in salinity on the rates of photosynthesis and respiration of the zooxanthellate coral Stylophora pistillata. Marine Ecology Progress Series 181:309-314. 1999 Primary Production; Salinity; Stony Coral
Ganzon-Fortes, E. T. 1999. Photosynthetic and respiratory responses of the agarophyte Gelidiella acerosa collected from tidepool, intertidal and subtidal habitats. Hydrobiologia 321-328. 1999 Philippines Algae; Primary Production; Salinity
Gardella, D. J. and P. J. Edmunds. 1999. The oxygen microenvironment adjacent to the tissue of the scleractinian Dichocoenia stokesii and its effects on symbiont metabolism. Marine Biology 135:289-295. 1999 Primary Production; Seawater Flow; Stony Coral; Zooxanthellae
Gattuso, J.-P., D. Allemand, and M. Frankignoulle. 1999. Photosynthesis and calcification at cellular, organismal and community levels in coral reefs: A review on interactions and control by carbonate chemistry. American Zoologist 39:160-183. 1999 Global Review Calcium Carbonate Deposition; Climate; CO2; Primary Production; Stony Coral
Gattuso, J.-P., M. Frankignoulle, and S. V. Smith. 1999. Measurement of community metabolism and significance in the coral reef CO2 source-sink debate. Proceedings of the National Academy of Sciences of the United States of America 96:13017-13022. 1999 CO2; Primary Production
Grottoli, A. G. and G. M. Wellington. 1999. Effect of light and zooplankton on skeletal δ13C values in the eastern Pacific corals Pavona clavus and Pavona gigantea. Coral Reefs 18:29-41. 1999 US Pacific & Hawaii Light; Plankton; Primary Production; Stony Coral
Hall, L. W., J. M. Giddings, K. R. Solomon, and R. Balcomb. 1999. An ecological risk assessment for the use of Irgarol 1051 as an algaecide for antifoulant paints. Critical Reviews in Toxicology 29:367-437. 1999 Europe Field Study & Monitoring Algae; Boating Regulations; Chemical Use Regulations; Docks & Marinas; Environmental Monitoring, Mapping, & Scientific Research; Fertilizer & Pesticide Use; Fish; Invertebrates; Nutrients; Primary Production; Small Boats; Tourism & Recreation
Jones, R. J. and O. Hoegh-Guldberg. 1999. Effects of cyanide on coral photosynthesis: Implications for identifying the cause of coral bleaching and for assessing the environmental effects of cyanide fishing. Marine Ecology Progress Series 177:83-91. 1999 Cuba Algae; Finfish Harvest; Light; Primary Production; Stony Coral; Zooxanthellae
Jones, R. J., T. Kildea, and O. Hoegh-Guldberg. 1999. PAM chlorophyll fluorometry: A new in situ technique for stress assessment in scleractinian corals, used to examine the effects of cyanide from cyanide fishing. Marine Pollution Bulletin 38:864-874. 1999 US Pacific & Hawaii Field Study & Monitoring; Decision Support Frameworks & Tools Algae; Finfish Harvest; Fish; Hotel & Food Services; Primary Production; Stony Coral; Toxics; Zooxanthellae
Kaandorp, J. A. 1999. Morphological analysis of growth forms of branching marine sessile organisms along environmental gradients. Marine Biology 134:295-306. 1999 Model Hydrocoral; Primary Production; Sponges; Stony Coral
Kawahata, H., A. Suzuki, and K. Goto. 1999. Coral reefs as sources of atmospheric CO2 - Spatial distribution of PCO2 in Majuro Atoll. Geochemical Journal 33:295-303. 1999 Calcium Carbonate Deposition; CO2; Primary Production
Leclercq, N., J.-P. Gattuso, and J. Jaubert. 1999. Measurement of oxygen metabolism in open-top aquatic mesocosms: Application to a coral reef community. Marine Ecology Progress Series 177:299-304. 1999 Primary Production
McClanahan, T. R. 1999. Predation and the control of the sea urchin Echinometra viridis and fleshy algae in the patch reefs of Glovers Reef, Belize. Ecosystems 2:511-523. 1999 South & Central America; Belize; Madagascar; Caribbean Algae; Fish; Fleshy Macroalgae; Invertivorous Fish; Primary Production; Sea Urchins; Small Herbivorous Fish
Mioche, D. and P. Cuet. 1999. Carbon, carbonate and nutrient fluxes in summer on a fringing reef subject to anthropogenic pressure (Reunion Island, Indian Ocean) [Metabolisme du carbone, des carbonates et des sels nutritifs en saison chaude, sur un recif frangeant soumis a une pressio. Comptes Rendus de l'Academie de Sciences - Serie IIa: Sciences de la Terre et des Planetes 329:53-59. 1999 Indian Ocean; Reunion; India Discharges; Nutrients; Primary Production; Stony Coral; Surface & Groundwater Flow
Ochieng, C. A. and P. L. A. Erftemeijer. 1999. Accumulation of seagrass beach cast along the Kenyan coast: A quantitative assessment. Aquatic Botany 65:221-238. 1999 Kenya Field Study & Monitoring Beaches & Nature Parks; Fleshy Macroalgae; Littering; Marine Worms; Nutrients; Primary Production; Seagrasses
Ohde, S. and R. Van Woesik. 1999. Carbon dioxide flux and metabolic processes of a coral reef, Okinawa. Bulletin of Marine Science 65:559-576. 1999 Japan CO2; Nutrients; Primary Production
Porter, J. W., S. K. Lewis, and K. G. Porter. 1999. The effect of multiple stressors on the Florida Keys coral reef ecosystem: A landscape hypothesis and a physiological test. Limnology and Oceanography 44:941-949. 1999 Florida; US East Coast (NC, SC, GA); Atlantic Ocean Model Nutrients; Primary Production; Salinity; Seawater Flow
Ralph, P. J., R. Gademann, A. W. D. Larkum, and U. Schreiber. 1999. In situ underwater measurements of photosynthetic activity of coral zooxanthellae and other reef-dwelling dinoflagellate endosymbionts. Marine Ecology Progress Series 180:139-147. 1999 Germany Anemones & Zooanthids; Dive, Snorkeling, & Swimming Tourism; Light; Primary Production; Special Use Permitting; Stony Coral; Zooxanthellae
Schaffelke, B. 1999. Short-term nutrient pulses as tools to assess responses of coral reef macroalgae to enhanced nutrient availability. Marine Ecology Progress Series 182:305-310. 1999 Australia Decision Support Frameworks & Tools Algae; Fleshy Macroalgae; Non-point Source Runoff; Nutrients; Primary Production; Surface & Groundwater Flow
Strasser, R. J., M. Tsimilli-Michael, and M. Pecheux. 1999. Perpetual adaptation in a perpetually changing environment as a survival strategy of plants: A case study in foraminifers concerning coral reef bleaching. Photosynthetica 37:71-85. 1999 Global; Mauritius CO2; Light; Primary Production
Suzuki, A. and H. Kawahata. 1999. Partial pressure of carbon dioxide in coral reef lagoon waters: Comparative study of atolls and barrier reefs in the Indo-Pacific oceans. Journal of Oceanography 55:731-745. 1999 US Pacific & Hawaii; Indian Ocean; Maldives; India; Pacific Ocean; Palau Calcium Carbonate Deposition; CO2; Primary Production; Surface & Groundwater Flow
Swart, P. K., G. Healy, L. Greer, M. Lutz, A. Saied, D. Anderegg, R. E. Dodge, and D. Rudnick. 1999. The use of proxy chemical records in coral skeletons to ascertain past environmental conditions in Florida Bay. Estuaries 22:384-397. 1999 Florida Index or Indicator Nutrients; Primary Production; Salinity; Stony Coral
Tarasov, V. G., A. V. Gebruk, V. M. Shulkin, G. M. Kamenev, V. I. Fadeev, V. N. Kosmynin, V. V. Malakhov, D. A. Starynin, and A. I. Obzhirov. 1999. Effect of shallow-water hydrothermal venting on the biota of Matupi Harbour (Rabaul Caldera, New Britain Island, Papua New Guinea). Continental Shelf Research 19:79-116. 1999 Papua New Guinea; Britain Model Marine Worms; Microorganisms; Nutrients; Plankton; Primary Production; Salinity; Sediment; Sponges
Titlyanov, E. A., T. V. Titlyanova, J. Tsukahara, R. Van Woesik, and K. Yamazato. 1999. Experimental increases of zooxanthellae density in the coral Stylophora pistillata elucidate adaptive mechanisms for zooxanthellae regulation. Symbiosis 26:347-362. 1999 Plankton; Primary Production; Special Use Permitting; Zooxanthellae
Adey, W. H. 1998. Coral reefs: algal structured and mediated ecosystems in shallow, turbulent, alkaline waters. Journal of Phycology 34:393-406. 1998 Algae; Primary Production; Zooxanthellae
Allemand, D., P. Furla, and S. Benazet-Tambutte. 1998. Mechanisms of carbon acquisition for endosymbiont photosynthesis in Anthozoa. Canadian Journal of Botany 76:925-941. 1998 Review; Model Anemones & Zooanthids; Light; Primary Production; Zooxanthellae
Beer, S., B. Vilenkin, A. Weil, M. Veste, L. Susel, and A. Eshel. 1998. Measuring photosynthetic rates in seagrasses by pulse amplitude modulated (PAM) fluorometry. Marine Ecology Progress Series 174:293-300. 1998 Primary Production; Seagrasses
Beer, S., M. Ilan, A. Eshel, A. Weil, and I. Brickner. 1998. Use of pulse amplitude modulated (PAM) fluorometry for in situ measurements of photosynthesis in two Red Sea faviid corals. Marine Biology 131:607-612. 1998 Cuba; Germany Field Study & Monitoring Dive, Snorkeling, & Swimming Tourism; Light; Primary Production; Zooxanthellae
Behrenfeld, M. J., O. Prasil, Z. S. Kolber, M. Babin, and P. G. Falkoski. 1998. Compensatory changes in photosystem II electron turnover rates protect photosynthesis from photoinhibition. Photochemistry Research 58:259-268. 1998 Plankton; Primary Production
Boucher, G., J. Clavier, C. Hily, and J.-P. Gattuso. 1998. Contribution of soft-bottoms to the community metabolism (primary production and calcification) of a barrier reef flat (Moorea, French Polynesia). Journal of Experimental Marine Biology and Ecology 225:269-283. 1998 Cuba Model Calcium Carbonate Deposition; CO2; Light; Primary Production; Sediment
Charpy, L., C. Charpy-Roubaud, and P. Buat. 1998. Excess primary production, calcification and nutrient fluxes of a patch reef (Tikehau atoll, French Polynesia). Marine Ecology Progress Series 173:139-147. 1998 Calcium Carbonate Deposition; Nutrients; Primary Production; Sediment; Surface & Groundwater Flow
Chisholm, J. R. M. and D. J. Barnes. 1998. Anomalies in coral reef community metabolism and their potential importance in the reef CO2 source-sink debate. Proceedings of the National Academy of Sciences of the United States of America 95:6566-6569. 1998 Global Calcium Carbonate Deposition; CO2; Primary Production
Ferrier-Pages, C., D. Allemand, J.-P. Gattuso, J. Jaubert, and F. Rassoulzadegan. 1998. Microheterotrophy in the zooxanthellate coral Stylophora pistillata: Effects of light and ciliate density. Limnology and Oceanography 43:1639-1648. 1998 Cuba Light; Microorganisms; Nutrients; Plankton; Primary Production
Furla, P., S. Benazet-Tambutte, J. Jaubert, and D. Allemand. 1998. Functional polarity of the tentacle of the sea anemone Anemonia viridis: Role in inorganic carbon acquisition. American Journal of Physiology - Regulatory Integrative and Comparative Physiology 274. 1998 Anemones & Zooanthids; Primary Production; Stony Coral
Gattuso, J.-P., M. Frankignoulle, and R. Wollast. 1998. Carbon and carbonate metabolism in coastal aquatic ecosystems. Annual Review of Ecology and Systematics 29:405-434. 1998 Global Review Mangroves; Nutrients; Primary Production
Hader, D.-P., H. D. Kumar, R. C. Smith, and R. C. Worrest. 1998. Effects on aquatic ecosystems. Journal of Photochemistry and Photobiology B: Biology 46:53-68. 1998 Global; US East Coast (NC, SC, GA); Europe Field Study & Monitoring; Model Algae; Climate; Cyanobacteria; Light; Microorganisms; Nutrients; Plankton; Primary Production; Sea Urchins; Seagrasses; Wetlands
Hansen, C. W., J. Lynch, and C.-O. Ottosen. 1998. Response to phosphorus availability during vegetative and reproductive growth of chrysanthemum: I. Whole-plant carbon dioxide exchange. Journal of the American Society for Horticultural Science 123:215-222. 1998 CO2; Primary Production
Jaubert Jean, M., R. M. Chisholm John, MA NU EL Marchioretti, and FA BR IC E Priouzeau. 1998. Submersible respirometer designed to measure the metabolism of benthic marine plants and invertebrates. Pages 1754-1756 in Oceans Conference Record (IEEE). 1998 Cuba Fleshy Macroalgae; Housing; Primary Production; Seagrasses; Stony Coral
Jones, R. J., O. Hoegh-Guldberg, A. W. D. Larkum, and U. Schreiber. 1998. Temperature-induced bleaching of corals begins with impairment of the CO2 fixation mechanism in zooxanthellae. Plant, Cell and Environment 21:1219-1230. 1998 Model CO2; Light; Primary Production; Stony Coral; Zooxanthellae
Muscatine, L., C. Ferrier-Pages, A. Blackburn, R. D. Gates, G. Baghdasarian, and D. Allemand. 1998. Cell-specific density of symbiotic dinoflagellates in tropical anthozoans. Coral Reefs 17:329-337. 1998 Florida; US Pacific & Hawaii; Jamaica Index or Indicator Algae; Anemones & Zooanthids; CO2; Nutrients; Primary Production; Substrate
Robertson, A. I., P. Dixon, and D. M. Alongi. 1998. The influence of fluvial discharge on pelagic production in the Gulf of Papua, Northern Coral Sea. Estuarine Coastal and Shelf Science 46:319-331. 1998 Papua New Guinea Discharges; Microorganisms; Nutrients; Plankton; Primary Production; Salinity; Surface & Groundwater Flow
Schaffelke, B. and D. W. Klumpp. 1998. Short-term nutrient pulses enhance growth and photosynthesis of the coral reef macroalga Sargassum baccularia. Marine Ecology Progress Series 170:95-105. 1998 Australia Field Study & Monitoring Algae; Fleshy Macroalgae; Non-point Source Runoff; Nutrients; Primary Production; Surface & Groundwater Flow
Small, Allegra, and Walter H. Adey. 1998. Reef corals, zooxanthellae & free- living algae: interactions that optimize calcification and primary production. Coral Reefs 1998 Algae; Primary Production; Zooxanthellae
Stambler, N. 1998. Effects of light intensity and ammonium enrichment on the hermatypic coral Stylophora pistillata and its zooxanthellae. Symbiosis 24:127-146. 1998 Algae; Nutrients; Primary Production; Zooxanthellae
Teai, T., J. H. Drollet, J.-P. Bianchini, A. Cambon, and P. M. V. Martin. 1998. Occurrence of ultraviolet radiation-absorbing mycosporine-like amino acids in coral mucus and whole corals of french polynesia. Marine and Freshwater Research 49:127-132. 1998 Algae; Light; Primary Production; Stony Coral
Van Rooij, J. M., J. J. Videler, and J. H. Bruggemann. 1998. High biomass and production but low energy transfer efficiency of Caribbean parrotfish: Implications for trophic models of coral reefs. Journal of Fish Biology 53:154-178. 1998 South & Central America; Antilles; Caribbean Model Corallivorous Fish; Finfish Harvest; Fish; Large Herbivorous Fish; Primary Production
Whitaker, F. F. and P. L. Smart. 1998. Hydrology, geochemistry and diagenesis of fracture blue holes, South Andros, Bahamas. Cave and Karst Science 25:75-82. 1998 Bahamas Index or Indicator Calcium Carbonate Deposition; CO2; Discharges; Microorganisms; Primary Production; Salinity; Seawater Flow; Surface & Groundwater Flow
Williams, S. L. and R. C. Carpenter. 1998. Effects of unidirectional and oscillatory water flow on nitrogen fixation (acetylene reduction) in coral reef algal turfs, Kaneohe Bay, Hawaii. Journal of Experimental Marine Biology and Ecology 226:293-316. 1998 US Pacific & Hawaii; Cuba Field Study & Monitoring Nutrients; Primary Production; Seawater Flow
Withers, K. J. T., A. J. Grant, and R. Hinde. 1998. Effects of free amino acids on the isolated symbiotic algae of the coral Plesiastrea versipora (Lamarck): Absence of a host release factor response. Comparative Biochemistry and Physiology Part A 120:599-607. 1998 Cuba Algae; Primary Production
Boglio, E. C. and J. S. Lucas. 1997. Impacts of ectoparasitic gastropods on growth, survival, and physiology of juvenile giant clams (Tridacna gigas), including a simulation model of mortality and reduced growth rate. Aquaculture 150:25-43. 1997 Australia Field Study & Monitoring; Model Bivalves; Primary Production
Chakraborty, S. and R. Ramesh. 1997. Environmental significance of carbon and oxygen isotope ratios of banded corals from Lakshadweep, India. Quaternary International 37:55-65. 1997 India Primary Production; Sediment; Stony Coral
Cheshire, A. C., C. R. Wilkinson, S. Seddon, and G. Westphalen. 1997. Bathymetric and seasonal changes in photosynthesis and respiration of the phototrophic sponge Phyllospongia lamellosa in comparison with respiration by the heterotrophic sponge Ianthella basta on Davies reef, Great Barrier Reef. Marine and Freshwater Research 48:589-599. 1997 Australia Cyanobacteria; Microorganisms; Primary Production; Sponges
Falkowski, Paul G., and John A. Raven. 1997. Aquatic Photosynthesis Blackwell Science p257. 1997 Primary Production; Zooxanthellae
Franklin, L. A. and A. W. D. Larkum. 1997. Multiple strategies for a high light existence in a tropical marine macroalga. Photosynthesis Research 53:149-159. 1997 Algae; Light; Primary Production; Surface & Groundwater Flow
Franklin, L. A. and R. M. Forster. 1997. The changing irradiance environment: consequences for marine macrophyte physiology, productivity and ecology. European Journal of Phycology 32:207-232. 1997 Algae; Light; Primary Production
Ganzon-Fortes, E. T. 1997. Influence of tidal location on morphology, photosynthesis and pigments of the agarophyte, Gelidiella acerosa, from Northern Philippines. Journal of Applied Phycology 9:525-532. 1997 Philippines Aquaculture; Light; Primary Production
Gattuso, J.-P., C. E. Payri, M. Pichon, B. Delesalle, and M. Frankignoulle. 1997. Primary production, calcification, and air-sea CO2 fluxes of a macroalgal-dominated coral reef community (Moorea, French Polynesia). Journal of Phycology 33:729-738. 1997 Algae; Calcareous Macroalgae; Calcium Carbonate Deposition; CO2; Coralline Algae; Primary Production
Helmuth, B. S. T., K. P. Sebens, and T. L. Daniel. 1997. Morphological variation in coral aggregations: Branch spacing and mass flux to coral tissues. Journal of Experimental Marine Biology and Ecology 209:233-259. 1997 South & Central America; Belize Field Study & Monitoring; Lab Study; Model Light; Primary Production; Seawater Flow; Sediment; Stony Coral; Substrate; Zooxanthellae
Juillet-Leclerc, A., J.-P. Gattuso, L. F. Montaggioni, and M. Pichon. 1997. Seasonal variation of primary productivity and skeletal δ13C and δ18O in the zooxanthellate scleractinian coral Acropora formosa. Marine Ecology Progress Series 157:109-117. 1997 Australia Model Light; Primary Production; Stony Coral
Lesser, M. P. 1997. Oxidative stress causes coral bleaching during exposure to elevated temperatures. Coral Reefs 16:187-192. 1997 South & Central America; Caribbean Algae; Invertebrates; Light; Primary Production; Stony Coral
Magnusson, G. 1997. Diurnal measurements of Fv/Fm used to improve productivity estimates in macroalgae. Marine Biology 130:203-208. 1997 Algae; Light; Primary Production
McConnaughey, T. A., J. Burdett, J. F. Whelan, and C. K. Paull. 1997. Carbon isotopes in biological carbonates: Respiration and photosynthesis. Geochimica et Cosmochimica Acta 61:611-622. 1997 CO2; Fish; Primary Production; Snails & Conch
Moberg, F., M. Nystrom, N. Kautsky, M. Tedengren, and P. Jarayabhand. 1997. Effects of reduced salinity on the rates of photosynthesis and respiration in the hermatypic corals Porites lutea and Pocillopora damicornis. Marine Ecology Progress Series 157:53-59. 1997 Thailand Primary Production; Salinity; Stony Coral
Nudds, J. and A. Day. 1997. The effects of clastic sedimentation on a fasciculate rugose coral from the Lower Carboniferous of northern England. Boletin - Real Sociedad Espanola de Historia Natural: Seccion Geologica 91:93-97. 1997 England Algae; Calcium Carbonate Deposition; Primary Production; Sediment
Ribera, G., M. Coloreu, C. Rodriguez-Prieto, and E. Ballesteros. 1997. Phytobenthic assemblages of Addaia Bay (Menorca, western Mediterranean): Composition and distribution. Botanica Marina 40:523-532. 1997 Algae; Docks & Marinas; Dredging, Draining, & Filling; Fleshy Macroalgae; Primary Production; Seagrasses
Ritchie, R. J., A. J. Grant, K. Eltringham, and R. Hinde. 1997. Clotrimazole, a model compound for the host release factor of the coral Plesiastrea versipora. Australian Journal of Plant Physiology 24:283-290. 1997 Cuba Model Algae; Fertilizer & Pesticide Use; Invertebrates; Primary Production
Romaine, S., E. Tambutte, D. Allemand, and J.-P. Gattuso. 1997. Photosynthesis, respiration and calcification of a zooxanthellate scleractinian coral under submerged and exposed conditions. Marine Biology 129:175-182. 1997 Index or Indicator Light; Primary Production; Stony Coral
Schlichter, D., H. Kampmann, and S. Conrady. 1997. Trophic potential and photoecology of endolithic algae living within coral skeletons. Marine Ecology 18:299-317. 1997 Algae; Light; Primary Production; Stony Coral; Zooxanthellae
Schreiber, U., R. Gademann, P. J. Ralph, and A. W. D. Larkum. 1997. Assessment of photosynthetic performance of Prochloron in Lissoclinum patella in hospite by chlorophyll fluorescence measurements. Plant and Cell Physiology 38:945-951. 1997 Australia Cyanobacteria; Dive, Snorkeling, & Swimming Tourism; Microorganisms; Primary Production
Stapel, J., R. Manuntun, and M. A. Hemminga. 1997. Biomass loss and nutrient redistribution in an Indonesian Thalassia hemprichii seagrass bed following seasonal low tide exposure during daylight. Marine Ecology Progress Series 148:251-262. 1997 Indonesia Nutrients; Primary Production; Seagrasses; Sediment
Surge, D. M., M. Savarese, J. R. Dodd, and K. C. Lohmann. 1997. Carbon isotopic evidence for photosynthesis in early Cambrian oceans. Geology 25:503-506. 1997 Australia Primary Production
Tun, K. P. P., A. C. Cheshire, and L. M. Chou. 1997. Twenty-four hour in situ monitoring of oxygen production and respiration of the colonial zoanthid Palythoa. Environmental Monitoring and Assessment 44:33-43. 1997 Field Study & Monitoring Anemones & Zooanthids; Light; Primary Production
Allison, N., A. W. Tudhope, and A. E. Fallick. 1996. Factors influencing the stable carbon and oxygen isotopic composition of Porites lutea coral skeletons from Phuket, South Thailand. Coral Reefs 15:43-57. 1996 Thailand Model Primary Production; Salinity; Stony Coral; Zooxanthellae
Al-Moghrabi, S., C. Goiran, D. Allemand, N. Speziale, and J. Jaubert. 1996. Inorganic carbon uptake for photosynthesis by the symbiotic coral- dinoflagellate association: II. Mechanisms for bicarbonate uptake. Journal of Experimental Marine Biology and Ecology 199:227-248. 1996 Primary Production; Zooxanthellae
Duarte, C. M. and J. Cebrian. 1996. The fate of marine autotrophic production. Limnology and Oceanography 41:1758-1766. 1996 Global Algae; Carbon Storage & Cycling; Mangroves; Plankton; Primary Production; Seagrasses; Sediment
Ellison, A. M. and E. J. Farnsworth. 1996. Spatial and temporal variability in growth of Rhizophora mangle saplings on coral cays: Links with variation in insolation, herbivory, and local sedimentation rate. Journal of Ecology 84:717-731. 1996 South & Central America; Belize; Caribbean Decision Support Frameworks & Tools Mangroves; Primary Production; Sediment; Water Depth & Sea Level
Estes, J. A. 1996. The influence of large, mobile predators in aquatic food webs: examples from sea otters and kelp forests. Pages 65-72 Aquatic predators and their prey. 1996 US Pacific & Hawaii; Columbia Algae; Complex Habitat & Resources; Invertebrates; Primary Production; Sea Urchins; Seagrasses
Frankignoulle, M., J.-P. Gattuso, R. Biondo, I. Bourge, G. Copin-Montegut, and M. Pichon. 1996. Carbon fluxes in coral reefs. II. Eulerian study of inorganic carbon dynamics and measurement of air-sea CO2 exchanges. Marine Ecology Progress Series 145:123-132. 1996 Global; Australia CO2; Primary Production; Surface & Groundwater Flow
Franklin, L. A., G. G. R. Seaton, C. E. Lovelock, and A. W. D. Larkum. 1996. Photoinhibition of photosynthesis on a coral reef. Plant, Cell and Environment 19:825-836. 1996 Australia Algae; Calcareous Macroalgae; Fleshy Macroalgae; Primary Production
Furnas, M. J. and A. W. Mitchell. 1996. Pelagic primary production in the Coral and southern Solomon Seas. Marine and Freshwater Research 47:695-706. 1996 Australia Plankton; Primary Production
Gattuso, J.-P., M. Pichon, B. Delesalle, C. Canon, and M. Frankignoulle. 1996. Carbon fluxes in coral reefs. I. Lagrangian measurement of community metabolism and resulting air-sea CO2 disequilibrium. Marine Ecology Progress Series 145:109-121. 1996 Australia Field Study & Monitoring; Model Calcium Carbonate Deposition; CO2; Light; Primary Production
Goiran, C., S. Al-Moghrabi, D. Allemand, and J. Jaubert. 1996. Inorganic carbon uptake for photosynthesis by the symbiotic coral/dinoflagellate association: I. Photosynthetic performances of symbionts and dependence on sea water bicarbonate. Journal of Experimental Marine Biology and Ecology 199:207-225. 1996 CO2; Light; Primary Production; Stony Coral; Substrate; Zooxanthellae
Harris, P. T., C. B. Pattiaratchi, J. B. Keene, R. W. Dalrymple, J. V. Gardner, E. K. Baker, A. R. Cole, D. Mitchell, P. Gibbs, and W. W. Schroeder. 1996. Late quaternary deltaic and carbonate sedimentation in the Gulf of Papua foreland basin: Response to sea-level change. Journal of Sedimentary Research 66:801-819. 1996 Australia Algae; Calcareous Macroalgae; Discharges; Primary Production; Sediment; Surface & Groundwater Flow; Water Depth & Sea Level
Kitheka, J. U., B. O. Ohowa, B. M. Mwashote, W. S. Shimbira, J. M. Mwaluma, and J. M. Kazungu. 1996. Water circulation dynamics, water column nutrients and plankton productivity in a well-flushed tropical bay in Kenya. Journal of Sea Research 35:257-268. 1996 Kenya Discharges; Mangroves; Nutrients; Plankton; Primary Production; Seagrasses; Surface & Groundwater Flow
Leletkin, V. A., E. A. Titlyanov, and Z. Dubinsky. 1996. Photosynthesis and respiration of the zooxanthellae in hermatypic corals habitated on different depths of the Gulf of Filat. Photosynthetica 32:481-490. 1996 Algae; Light; Primary Production; Stony Coral; Zooxanthellae
Lesser, M. P. 1996. Elevated temperatures and ultraviolet radiation cause oxidative stress and inhibit photosynthesis in symbiotic dinoflagellates. Limnology and Oceanography 41:271-283. 1996 Algae; Invertebrates; Light; Primary Production; Zooxanthellae
Lesser, M. P. and S. Lewis. 1996. Action spectrum for the effects of UV radiation on photosynthesis in the hermatypic coral Pocillopora damicornis. Marine Ecology Progress Series 134:171-177. 1996 US Pacific & Hawaii Algae; Light; Primary Production; Stony Coral
Marubini, F. and P. S. Davies. 1996. Nitrate increases zooxanthellae population density and reduces skeletogenesis in corals. Marine Biology 127:319-328. 1996 Cuba Lab Study; Model CO2; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Nacorda, H. M. E. and H. T. Yap. 1996. Macroinfaunal biomass and energy flow in a shallow reef flat of the northwestern Philippines. Hydrobiologia 341:37-49. 1996 Philippines Field Study & Monitoring Environmental Monitoring, Mapping, & Scientific Research; Marine Worms; Molluscs; Primary Production; Salinity; Sediment; Substrate
Opitz, S. 1996. Trophic Interactions in Caribbean Coral Reefs. International Center for Living Aquatic Resources Management, Manila, Philippines. 1996 South & Central America; US Virgin Islands; Puerto Rico; US Pacific & Hawaii; Philippines; Caribbean Field Study & Monitoring; Model Apex Fish Predators; Corallivorous Fish; Fish; Fishing Sector; Large Herbivorous Fish; Lobster, Crab, & Shrimp; Piscivorous Fish; Primary Production; Sediment; Snails & Conch
Shashar, N., S. Kinane, P. L. Jokiel, and M. R. Patterson. 1996. Hydromechanical boundary layers over a coral reef. Journal of Experimental Marine Biology and Ecology 199:17-28. 1996 US Pacific & Hawaii Model Primary Production; Seawater Flow; Sediment; Stony Coral
Swart, P. K., J. J. Leder, A. M. Szmant, and R. E. Dodge. 1996. The origin of variations in the isotopic record of scleractinian corals: II. Carbon. Geochimica et Cosmochimica Acta 60:2871-2885. 1996 Florida Field Study & Monitoring; Model Primary Production; Stony Coral; Zooxanthellae
Warner, M. E., W. K. Fitt, and G. W. Schmidt. 1996. The effects of elevated temperature on the photosynthetic efficiency of zooxanthellae in hospite from four different species of reef coral: A novel approach. Plant, Cell and Environment 19:291-299. 1996 Algae; Primary Production; Stony Coral; Zooxanthellae
Yamashiro, H. and M. Nishihira. 1996. Phototaxis in Fungiidae corals (scleractinia). Marine Biology 124:461-465. 1996 Algae; Primary Production; Stony Coral
Clavier, J., P. Chardy, and C. Chevillon. 1995. Sedimentation of particulate matter in the south-west lagoon of New Caledonia: Spatial and temporal patterns. Estuarine Coastal and Shelf Science 40:281-294. 1995 New Caledonia Nutrients; Primary Production; Sediment
Dullo, W.-C., M. Gektidis, S. Golubic, G. A. Heiss, H. Kampmann, W. Kiene, D. K. Kroll, M. L. Kuhrau, G. Radtke, J. G. Reijmer, G. B. Reinicke, D. Schlichter, H. Schuhmacher, and K. Vogel. 1995. Factors controlling holocene reef growth: An interdisciplinary approach. Facies 32:145-188. 1995 Global; Bahamas; Egypt; Sudan; Djibouti Field Study & Monitoring Algae; Cyanobacteria; Light; Microorganisms; Non-point Source Runoff; Nutrients; Octocoral; Plankton; Primary Production; Sea Urchins; Sediment; Snails & Conch; Stony Coral; Substrate; Tourism & Recreation; Water Depth & Sea Level; Zooxanthellae
Fabricius, K. E. and D. W. Klumpp. 1995. Widespread mixotrophy in reef-inhabiting soft corals: the influence of depth, and colony expansion and contraction on photosynthesis. Marine Ecology Progress Series 125:195-204. 1995 Australia Light; Octocoral; Primary Production
Flajs, G., M. Vigener, H. Keupp, D. Meischner, F. Neuweiler, J. Paul, J. Reitner, K. Warnke, H. Weller, P. Dingle, C. Hensen, P. Schafer, P. Gautret, R. R. Leinfelder, H. Hussner, and B. Kaufmann. 1995. Mud mounds: A polygenetic spectrum of fine-grained carbonate buildups. Facies 32:Jan-69. 1995 Calcium Carbonate Deposition; Complex Habitat & Resources; Microorganisms; Primary Production; Sponges
Gates, R. D., O. Hoegh-Guldberg, M. J. McFall-Ngai, K. Y. Bil, and L. Muscatine. 1995. Free amino acids exhibit anthozoan 'host factor' activity: They induce the release of photosynthate from symbiotic dinoflagellates in vitro. Proceedings of the National Academy of Sciences of the United States of America 92:7430-7434. 1995 US Pacific & Hawaii CO2; Nutrients; Ports & Harbors; Primary Production; Stony Coral
Gattuso, J.-P., M. Pichon, and M. Frankignoulle. 1995. Biological control of air-sea CO2 fluxes: effect of photosynthetic and calcifying marine organisms and ecosystems. Marine Ecology Progress Series 129:307-312. 1995 Model Calcium Carbonate Deposition; CO2; Primary Production
Johnson, C., D. Klumpp, J. Field, R. Bradbury. 1995. Carbon flux on coral reefs: effects of large shifts in community structure. Marine Ecology Progress Series 126:123-143. 1995 Australia Model Algae; Primary Production; Seastars; Zooxanthellae
Kayanne, H., A. Suzuki, and H. Saito. 1995. Diurnal changes in the partial pressure of carbon dioxide in coral reef water. Science 269:214-216. 1995 Japan Calcium Carbonate Deposition; CO2; Primary Production
Kuhl, M., Y. Cohen, T. Dalsgaard, B. B. Jorgensen, and N. P. Revsbech. 1995. Microenvironment and photosynthesis of zooxanthellae in scleractinian corals studied with microsensors for O2, pH and light. Marine Ecology Progress Series 117:159-177. 1995 Primary Production; Stony Coral; Zooxanthellae
McClanahan, T. R. 1995. A coral reef ecosystem-fisheries model: Impacts of fishing intensity and catch selection on reef structure and processes. Ecological Modelling 80:19-Jan. 1995 Model Algae; Calcium Carbonate Deposition; Finfish Harvest; Fish; Fishing Sector; Primary Production; Sea Urchins; Shoreline Protection; Small Herbivorous Fish
Shick, J. M., M. P. Lesser, W. C. Dunlap, W. R. Stochaj, B. E. Chalker, and J. W. Won. 1995. Depth-dependent responses to solar ultraviolet radiation and oxidative stress in the zooxanthellate coral Acropora microphthalma. Marine Biology 122:41-51. 1995 Australia Algae; Light; Primary Production; Stony Coral; Zooxanthellae
Suzuki, A., T. Nakamori, and H. Kayanne. 1995. The mechanism of production enhancement in coral reef carbonate systems: model and empirical results. Sedimentary Geology 99:259-280. 1995 Model CO2; Primary Production
Telesnicki, G. j. and W. M. Goldberg. 1995. Effects of Turbidity on the Photosynthesis and Respiration of Two South Florida Reef Coral Species. Bulletin of Marine Science 57:527-539. 1995 Florida Physical & Chemical Water Quality Criteria; Primary Production; Stony Coral
Van Tussenbroek, B. I. 1995. Thalassia testudinum leaf dynamics in a Mexican caribbean coral reef lagoon. Marine Biology 122:33-40. 1995 South & Central America; Caribbean; Mexico Discharges; Mangroves; Primary Production; Seagrasses
Yamashiro, H. 1995. The effects of HEBP, an inhibitor of mineral deposition, upon photosynthesis and calcification in the scleractinian coral, Stylophora pistillata. Journal of Experimental Marine Biology and Ecology 191:57-63. 1995 Primary Production; Stony Coral
Arsalane, W., B. Rousseau, and J. Duval. 1994. Influence of the pool size of the xanthophyll cycle on the effects of light stress in a diatom: competition between photoprotection and photoinhibition. Photochemistry and Photobiology 60:237-243. 1994 Light; Primary Production
Branden, K. L., D. A. Pollard, and H. A. Reimers. 1994. A review of recent artificial reef developments in Australia. Bulletin of Marine Science 55:982-994. 1994 Australia Review Artificial Habitat; Fish; Primary Production; Recreational Fishing; Tourism & Recreation
Hansen, J. A. and G. A. Skilleter. 1994. Effects of the gastropod Rhinoclavis aspera (Linnaeus, 1758) on microbial biomass and productivity in coral-reef-flat sediments. Australian Journal of Marine and Freshwater Research 45:569-584. 1994 Australia Algae; Microorganisms; Primary Production; Sediment
Lobban, C. S. and P. J. Harrison. 1994. Seaweed ecology and physiology. Seaweed ecology and physiology. 1994 Review Algae; Aquaculture; Nutrients; Primary Production; Salinity; Seagrasses
Burns, K. A., M. G. Ehrhardt, B. L. Howes, and C. D. Taylor. 1993. Subtidal benthic community respiration and production near the heavily oiled Gulf coast of Saudi Arabia. Marine Pollution Bulletin 27:199-205. 1993 Saudi Arabia Algae; Light; Petroleum Spills; Primary Production; Seagrasses; Sediment
Delesalle, B., M. Pichon, M. Frankignoulle, and J. P. Gattuso. 1993. Effects of a cyclone on coral reef phytoplankton biomass, primary production and composition (Moorea Island, French Polynesia). Journal of Plankton Research 15:1413-1423. 1993 Plankton; Primary Production
Erftemeijer, P. L. A., R. Osinga, and A. E. Mars. 1993. Primary production of seagrass beds in South Sulawesi (Indonesia): a comparison of habitats, methods and species. Aquatic Botany 46:67-90. 1993 Indonesia Primary Production; Seagrasses
Gattuso, J.-P., M. Pichon, B. Delesalle, and M. Frankignoulle. 1993. Community metabolism and air-sea CO2 fluxes in a coral reef ecosystem (Moorea, French Polynesia). Marine Ecology Progress Series 96:259-267. 1993 Calcium Carbonate Deposition; CO2; Light; Plankton; Primary Production
Hanelt, D., K. Huppertz, and W. Nultsch. 1993. Daily course of photosynthesis and photoinhibition in marine macroalgae investigated in the laboratory and field. Marine Ecology Progress Series 97:31-37. 1993 Field Study & Monitoring; Lab Study Algae; Primary Production
Harland, A. D., J. C. Navarro, P. Spencer Davies, and L. M. Fixter. 1993. Lipids of some Caribbean and Red Sea corals: total lipid, wax esters, triglycerides and fatty acids. Marine Biology 117:113-117. 1993 South & Central America; Caribbean Primary Production; Stony Coral
Kaiser, P., D. Schlichter, and H. W. Fricke. 1993. Influence of light on algal symbionts of the deep water coral Leptoseris fragilis. Marine Biology 117:45-52. 1993 Field Study & Monitoring Algae; Primary Production; Zooxanthellae
Kinzie III, R. A. 1993. Effects of ambient levels of solar ultraviolet radiation on zooxanthellae and photosynthesis of the reef coral Montipora verrucosa. Marine Biology 116:319-327. 1993 Light; Primary Production; Zooxanthellae
Quinn, T. M., F. W. Taylor, and T. J. Crowley. 1993. A 173 year stable isotope record from a tropical south pacific coral 0. Quaternary Science Reviews 12:407-418. 1993 Global; US Pacific & Hawaii; Australia; Vanuatu Climate; Primary Production; Water Depth & Sea Level
Rougerie, F. and B. Wauthy. 1993. The endo-upwelling concept: from geothermal convection to reef construction. Coral Reefs 12:19-30. 1993 Florida Field Study & Monitoring; Model Algae; CO2; Nutrients; Primary Production; Salinity
Bell, P. R. F. 1992. Eutrophication and coral reefs - Some examples in the Great Barrier Reef lagoon. Water Research 26:553-568. 1992 Australia Index or Indicator Algae; Non-point Source Runoff; Nutrients; Plankton; Primary Production; Seagrasses; Seastars; Surface & Groundwater Flow
Bosscher, H. and W. Schlager. 1992. Computer simulation of reef growth. Sedimentology 39:503-512. 1992 South & Central America; US Virgin Islands; Australia; Belize; Mexico Model Primary Production; Water Depth & Sea Level
Dykens, J. A., J. M. Shick, C. Benoit, G. R. Buettner, and G. W. Winston. 1992. Oxygen radical production in the sea anemone Anthopleura elegantissima and its endosymbiotic algae. Journal of Experimental Biology 168:219-241. 1992 Algae; Anemones & Zooanthids; Light; Primary Production; Zooxanthellae
Franklin, L. A., G. Levavasseur, C. B. Osmond, W. J. Henley, and J. Ramus. 1992. Two components of onset and recovery during photoinhibition of Ulva rotundata. Planta 186:399-408. 1992 Primary Production
Frederiksen, R., A. Jensen, and H. Westerberg. 1992. The distribution of the scleractinian coral Lophelia pertusa around the Faroe Islands and the relation to internal tidal mixing. Sarsia, Bergen 77:157-171. 1992 US East Coast (NC, SC, GA) Primary Production; Stony Coral
Hansen, J. A., D. W. Klumpp, D. M. Alongi, P. K. Dayton, and M. J. Riddle. 1992. Detrital pathways in a coral reef lagoon - II. Detritus deposition, benthic microbial biomass and production. Marine Biology 113:363-372. 1992 Australia Microorganisms; Primary Production; Sediment
Iglesias-Prieto, R., J. L. Matta, W. A. Robins, and R. K. Trench. 1992. Photosynthetic response to elevated temperature in the symbiotic dinoflagellate Symbiodinium microadriaticum in culture. Proceedings of the National Academy of Sciences of the United States of America 89:10302-10305. 1992 Index or Indicator Algae; Primary Production
Littler, M. M. and D. S. Littler. 1992. Results of the USSR-USA expedition in marine biology to the Seychelles Islands. Atoll Research Bulletin 1992 Indian Ocean; Seychelles; India Algae; Invertebrates; Light; Nutrients; Octocoral; Plankton; Primary Production; Seagrasses; Sediment; Stony Coral
Patterson, M. R. 1992. A chemical engineering view of cnidarian symbioses. American Zoologist 32:566-582. 1992 Model Algae; Primary Production; Stony Coral
Shashar, N. 1992. Endolithic algae within corals - Life in an extreme environment. Journal of Experimental Marine Biology and Ecology 163:277-286. 1992 Algae; Light; Primary Production
[No author name available]. 1991. The natural release of amino acids from the symbiotic coral Heteroxenia fuscescens (Ehrb.) as a function of photosynthesis. Journal of Experimental Marine Biology and Ecology 150:83-90. 1991 Nutrients; Octocoral; Primary Production; Zooxanthellae
Cheshire, A. C. and C. R. Wilkinson. 1991. Modelling the photosynthetic production by sponges on Davies Reef, Great Barrier Reef. Marine Biology 109:13-18. 1991 Australia Model Light; Primary Production; Sponges
Chisholm, J. R. M. and J.-P. Gattuso. 1991. Validation of the alkalinity anomaly technique for investigating calcification and photosynthesis in coral reef communities. Limnology and Oceanography 36:1232-1239. 1991 Calcium Carbonate Deposition; Nutrients; Primary Production; Stony Coral
Davies, P. S. 1991. Effect of daylight variations on the energy budgets of shallow-water corals. Marine Biology 108:137-144. 1991 US Pacific & Hawaii Model Light; Primary Production; Stony Coral; Water Depth & Sea Level; Zooxanthellae
Hopkinson Jr, C. S., R. D. Fallon, B.-O. Jansson, and J. P. Schubauer. 1991. Community metabolism and nutrient cycling at Gray's Reef, a hard bottom habitat in the Georgia Bight. Marine Ecology Progress Series 73:105-120. 1991 Nutrients; Primary Production; Sediment; Sponges
Lewis, J. B. and J. J. Boers. 1991. Patchiness and composition of coral reef demersal zooplankton. Journal of Plankton Research 13:1273-1289. 1991 Plankton; Primary Production; Salinity; Surface & Groundwater Flow
Littler, M. M. 1991. Deep-water rhodolith distribution, productivity, and growth history at sites of formation and subsequent degradation. Journal of Experimental Marine Biology and Ecology 150:163-182. 1991 Bahamas; Cuba Algae; Boring Sponges; Calcareous Macroalgae; Light; Marine Worms; Octocoral; Primary Production; Sponges
Littler, M. M., D. S. Littler, and E. A. Titlyanov. 1991. Comparisons of N- and P-limited productivity between high granitic islands versus low carbonate atolls in the Seychelles Archipelago: a test of the relative-dominance paradigm. Coral Reefs 10:199-209. 1991 Seychelles Algae; Fleshy Macroalgae; Marine Birds; Nutrients; Primary Production
Patterson, M. R., K. P. Sebens, and R. R. Olson. 1991. In situ measurements of flow effects on primary production and dark respiration in reef corals. Limnology and Oceanography 36:936-948. 1991 Primary Production
Rinkevich, B., Z. Wolodarsky, and Y. Loya. 1991. Coral-crab association: a compact domain of a multilevel trophic system. Hydrobiologia 279-284. 1991 Cuba Lobster, Crab, & Shrimp; Primary Production; Stony Coral; Zooxanthellae
Schlichter, D. and H. W. Fricke. 1991. Mechanisms of amplification of photosynthetically active radiation in the symbiotic deep-water coral Leptoseris fragilis. Hydrobiologia 389-394. 1991 Light; Primary Production; Stony Coral; Zooxanthellae
Schlichter, D., and G. Liebzit. 1991. The natural release of amino acids from the symbiotic coral Heteroxenia fuscescens (Ehrb) as a function of photosynthesis. Journal of Experimental Marine Biology and Ecology 150:83-90. 1991 Primary Production
Sorokin, Y. I. 1991. Biomass, metabolic rates and feeding of some common reef zoantharians and octocorals. Australian Journal of Marine and Freshwater Research 42:729-741. 1991 Octocoral; Primary Production; Stony Coral; Zooxanthellae
Sorokin, YU .I . 1991. Parameters of productivity and metabolism of coral reef ecosystems off central Vietnam. Estuarine Coastal and Shelf Science 33:259-280. 1991 Vietnam Algae; Microorganisms; Plankton; Primary Production
Titlyanov, E. A. 1991. The stable level of coral primary production in a wide light range. Hydrobiologia 383-387. 1991 Indian Ocean; India; China Light; Primary Production; Stony Coral; Zooxanthellae
Alongi, D. M. 1990. Effect of mangrove detrital outwelling on nutrient regeneration and oxygen fluxes in coastal sediments of the central Great Barrier Reef lagoon. Estuarine Coastal and Shelf Science 31:581-598. 1990 Australia; Cuba Lab Study Mangroves; Microorganisms; Non-point Source Runoff; Nutrients; Plankton; Primary Production; Sediment
Carpenter, R. C. 1990. Mass mortality of Diadema antillarum. I. Long-term effects on sea urchin population-dynamics and coral reef algal communities. Marine Biology 104:67-77. 1990 US Virgin Islands Algae; Complex Habitat & Resources; Primary Production; Sea Urchins; Storms & Hurricanes
Chisholm, J. R. M. 1990. A novel in situ respirometer for investigating photosynthesis and calcification in crustose coralline algae. Journal of Experimental Marine Biology and Ecology 141:15-29. 1990 Australia Algae; Calcium Carbonate Deposition; Coralline Algae; Housing; Primary Production
Coffroth, M. A. 1990. Mucous sheet formation on poritid corals: An evaluation of coral mucus as a nutrient source on reefs. Marine Biology 105:39-49. 1990 Florida; Puerto Rico; US Pacific & Hawaii; Australia; Panama Microorganisms; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Davidson, R. J. 1990. Pre-burial adsorption model for the genesis of gold in the Witwatersrand. Journal of The South African Institute of Mining and Metallurgy 90:53-57. 1990 Model Algae; CO2; Nutrients; Primary Production; Substrate
Dubinsky, Z., N. Stambler, M. Ben-Zion, L. R. McCloskey, L. Muscatine, and P. G. Falkowski. 1990. The effect of external nutrient resources on the optical properties and photosynthetic efficiency of Stylophora pistillata. Proceedings of the Royal Society B 239:231-246. 1990 Algae; CO2; Nutrients; Primary Production
Furnas, M. J., A. W. Mitchell, M. Gilmartin, and N. Revelante. 1990. Phytoplankton biomass and primary production in semi-enclosed reef lagoons of the central Great Barrier Reef, Australia. Coral Reefs 9:10-Jan. 1990 Australia Plankton; Primary Production
Gerard, V. A. 1990. Ecotypic differentiation in the kelp Laminaria saccharina: Phase-specific adaptation in a complex life cycle. Marine Biology 107:519-528. 1990 US East Coast (NC, SC, GA) Light; Primary Production
Hatcher, B. G. 1990. Coral reef primary productivity: A hierarchy of pattern and process. Trends in Ecology and Evolution 5:149-155. 1990 Nutrients; Primary Production
Lesser, M. P. and W. R. Stochaj. 1990. Photoadaptation and protection against active forms of oxygen in the symbiotic procaryote Prochloron sp. and its ascidian host. Applied and Environmental Microbiology 56:1530-1535. 1990 Australia Light; Primary Production
Lesser, M. P., W. R. Stochaj, D. W. Tapley, and J. M. Shick. 1990. Bleaching in coral reef anthozoans: effects of irradiance, ultraviolet radiation, and temperature on the activities of protective enzymes against active oxygen. Coral Reefs 8:225-232. 1990 South & Central America; US Pacific & Hawaii; Australia; Panama; Caribbean Anemones & Zooanthids; Light; Primary Production; Salinity; Zooxanthellae
Littler, M. M. and D. S. Littler. 1990. Productivity and nutrient relationships in psammophytic versus epilithic forms of Bryopsidales (Chlorophyta): comparisons based on a short-term physiological assay. Hydrobiologia 49-55. 1990 Calcareous Macroalgae; Fleshy Macroalgae; Nutrients; Primary Production; Sediment
Mazda, Y., Y. Sato, S. Sawamoto, H. Yokochi, and E. Wolanski. 1990. Links between physical, chemical and biological processes in Bashita-minato, a mangrove swamp in Japan. Estuarine Coastal and Shelf Science 31:817-833. 1990 Japan Algae; Light; Mangroves; Primary Production; Seawater Flow; Storms & Hurricanes
Roman, M. R., M. J. Furnas, and M. M. Mullin. 1990. Zooplankton abundance and grazing at Davies Reef, Great Barrier Reef, Australia. Marine Biology 105:73-82. 1990 Australia Microorganisms; Plankton; Primary Production
Williams, S. L. and R. C. Carpenter. 1990. Photosynthesis/photon flux density relationships among components of coral reef algal turfs. Journal of Phycology 26:36-40. 1990 US Virgin Islands Primary Production; Sea Urchins
Beiersdorf, H. 1989. Provenance and accumulation rates of Pliocene and Quaternary sediments from the western Coral Sea. Geologische Rundschau 78:987-998. 1989 US Pacific & Hawaii; Australia; Pacific Ocean Calcium Carbonate Deposition; Primary Production; Sediment
Edmunds, P. J. and P. S. Davies. 1989. An energy budget for Porites porites (Scleractinia), growing in a stressed environment. Coral Reefs 8:37-43. 1989 Light; Plankton; Primary Production; Sediment; Stony Coral
Fang, L.-s., Y.-w.J. Chen, and C.-s. Chen. 1989. Why does the white tip of stony coral grow so fast without zooxanthellae? Marine Biology 103:359-363. 1989 Taiwan Primary Production; Stony Coral; Zooxanthellae
Gladfelter, E. H., G. Michel, and A. Sanfelici. 1989. Metabolic gradients along a branch of the reef coral Acropora palmata. Bulletin of Marine Science 44:1166-1173. 1989 South & Central America; Caribbean Primary Production; Stony Coral; Zooxanthellae
Klumpp, D. W. and A. D. McKinnon. 1989. Temporal and spatial patterns in primary production of a coral-reef epilithic algal community. Journal of Experimental Marine Biology and Ecology 131:22-Jan. 1989 Australia Algae; Complex Habitat & Resources; Coralline Algae; Light; Primary Production; Small Herbivorous Fish; Turf Algae
Le Borgne, R., J. Blanchot, and L. Charpy. 1989. Zooplankton of tikehau atoll (Tuamotu archipelago) and its relationship to particulate matter. Marine Biology 102:341-353. 1989 Model Nutrients; Plankton; Primary Production
Lesser, M. P. and J. M. Shick. 1989. Effects of irradiance and ultraviolet radiation on photoadaptation in the zooxanthellae of Aiptasia pallida: primary production, photoinhibition, and enzymic defenses against oxygen toxicity. Marine Biology 102:243-255. 1989 Bermuda Anemones & Zooanthids; Light; Primary Production; Zooxanthellae
Lucas, J. S., W. J. Nash, C. M. Crawford, and R. D. Braley. 1989. Environmental influences on growth and survival during the ocean-nursery rearing of giant clams, Tridacna gigas (L.). Aquaculture 80:45-61. 1989 Australia Light; Primary Production
McConnaughey, T. 1989. 13C and 18O isotopic disequilibrium in biological carbonates: I. Patterns. Geochimica et Cosmochimica Acta 53:151-162. 1989 CO2; Primary Production
Muscatine, L., J. W. Porter, and I. R. Kaplan. 1989. Resource partitioning by reef corals as determined from stable isotope composition - I. δ13C of zooxanthellae and animal tissue vs depth. Marine Biology 100:185-193. 1989 Jamaica Algae; CO2; Primary Production; Zooxanthellae
Nguyen Tac, AN. 1989. Energy flow in the tropical marine shelf ecosystems of Vietnam. Biologiya Morya (Vladivostok) 2:15-Sep. 1989 China; Vietnam Fish; Mangroves; Plankton; Primary Production
Polunin, N. V. C. and D. W. Klumpp. 1989. Ecological correlates of foraging periodicity in herbivorous reef fishes of the Coral Sea. Journal of Experimental Marine Biology and Ecology 126:20-Jan. 1989 Algae; Fish; Primary Production; Small Herbivorous Fish; Turf Algae
Porter, J. W., W. K. Fitt, H. J. Spero, C. S. Rogers, and M. W. White. 1989. Bleaching in reef corals: physiological and stable isotopic responses. Proceedings of the National Academy of Sciences of the United States of America 86:9342-9346. 1989 Global; South & Central America; Caribbean Calcium Carbonate Deposition; Light; Primary Production; Stony Coral; Zooxanthellae
Rinkevich, B. 1989. The contribution of photosynthetic products to coral reproduction. Marine Biology 101:259-263. 1989 Field Study & Monitoring Primary Production; Stony Coral
Weis, V. M., G. J. Smith, and L. Muscatine. 1989. A \CO2 supply\" mechanism in zooxanthellate cnidarians: role of carbonic anhydrase". Marine Biology 100:195-202. 1989 Algae; Anemones & Zooanthids; CO2; Primary Production; Zooxanthellae
Abdel-Salam, H.A., J.W. Porter. 1988. Physiological effects of sediment rejection on photosynthesis and respiration in three Caribbean reef corals. Pages 285-9 in Proceedings of the 6th Int Coral Reef Sym. 1988 South & Central America; Caribbean Primary Production; Sediment; Stony Coral
Bethoux, J. P. 1988. Red Sea geochemical budgets and exchanges with the Indian Ocean. Marine Chemistry 24:83-92. 1988 Global; Indian Ocean; India Discharges; Nutrients; Primary Production
Dennison, W. C. and D. J. Barnes. 1988. Effect of water motion on coral photosynthesis and calcification. Journal of Experimental Marine Biology and Ecology 115:67-77. 1988 Cuba Field Study & Monitoring; Lab Study Primary Production; Stony Coral
Gladfelter, W. B. 1988. Marine organisms and communities. 1988 Echinoderms; Fish; Molluscs; Primary Production; Sponges
Hackney, J. M. and P. Sze. 1988. Photorespiration and productivity rates of a coral reef algal turf assemblage. Marine Biology 98:483-492. 1988 Algae; CO2; Primary Production
Hatcher, B. G. 1988. Coral reef primary productivity: A beggar's banquet. Trends in Ecology and Evolution 3:106-111. 1988 Review Agriculture; Primary Production
Hay, M. E., V. J. Paul, S. M. Lewis, K. Gustafson, J. Tucker, and R. N. Trindell. 1988. Can tropical seaweeds reduce herbivory by growing at night? Diel patterns of growth, nitrogen content, herbivory, and chemical versus morphological defenses. Oecologia 75:233-245. 1988 Algae; Calcareous Macroalgae; Corallivorous Fish; Large Herbivorous Fish; Nutrients; Primary Production; Small Herbivorous Fish
Payri, C. E. 1988. Halimeda contribution to organic and inorganic production in a Tahitian reef system. Coral Reefs 6:251-262. 1988 Field Study & Monitoring Calcareous Macroalgae; Calcium Carbonate Deposition; Primary Production
Polunin, N. V. C. 1988. Efficient uptake of algal production by a single resident herbivorous fish on the reef. Journal of Experimental Marine Biology and Ecology 123:61-76. 1988 Papua New Guinea Lab Study; Index or Indicator Fish; Primary Production; Small Herbivorous Fish
Farrant, P. A., M. A. Borowitzka, R. Hinde, and R. J. King. 1987. Nutrition of the temperate Australian soft coral Capnella gaboensis - I. Photosynthesis and carbon fixation. Marine Biology 95:565-574. 1987 Australia Field Study & Monitoring Octocoral; Primary Production; Zooxanthellae
Farrant, P. A., M. A. Borowitzka, R. Hinde, and R. J. King. 1987. Nutrition of the temperate Australian soft coral Capnella gaboensis - II. The role of zooxanthellae and feeding. Marine Biology 95:575-581. 1987 Australia Field Study & Monitoring; Lab Study Octocoral; Plankton; Primary Production; Zooxanthellae
Fricke, H. W., E. Vareschi, and D. Schlichter. 1987. Photoecology of the coral Leptoseris fragilis in the Red Sea twilight zone (an experimental study by submersible). Oecologia 73:371-381. 1987 Field Study & Monitoring Algae; Primary Production
Furnas, M. J. and A. W. Mitchell. 1987. Photosynthetic characteristics of Coral Sea picoplankton (<2 μm size fraction). Biological Oceanography 5:163-182. 1987 Australia Light; Plankton; Primary Production
Furnas, M. J. and A. W. Mitchell. 1987. Phytoplankton dynamics in the central Great Barrier Reef-II. Primary production. Continental Shelf Research 7:1049-1062. 1987 Australia Plankton; Primary Production
Kinzie III, R. A. and T. Hunter. 1987. Effect of light quality on photosynthesis of the reef coral Montipora verrucosa. Marine Biology 94:95-109. 1987 US Pacific & Hawaii Light; Primary Production
Koop, K. and A. W. D. Larkum. 1987. Deposition of organic material in a coral reef lagoon, One Tree Island, Great Barrier Reef. Estuarine Coastal and Shelf Science 25:9-Jan. 1987 Australia Algae; Nutrients; Primary Production; Sediment; Turf Algae
Kyle, D. 1987. The biochemical basis for photoinhibition fo photosystem II. Pages 197-226 Topics in photosynthesis, volume 9. Elsevier, Amsterdam. 1987 Primary Production
Muller-Parker, G. 1987. Seasonal variation in light-shade adaptation of natural populations of the symbiotic sea anemone Aiptasia pulchella (Carlgren, 1943) in Hawaii. Journal of Experimental Marine Biology and Ecology 112:165-183. 1987 US Pacific & Hawaii Anemones & Zooanthids; Light; Mangroves; Primary Production; Zooxanthellae
Tomascik, T. and F. Sander. 1987. Effects of eutrophication on reef-building corals - III. Reproduction of the reef-building coral Porites porites. Marine Biology 94:77-94. 1987 Index or Indicator Light; Nutrients; Primary Production; Stony Coral; Zooxanthellae
Wyman, K. D., Z. Dubinsky, J. W. Porter, and P. G. Falkowski. 1987. Light absorption and utilization among hermatypic corals: a study in Jamaica, West Indies. Marine Biology 96:283-292. 1987 Jamaica Light; Primary Production; Stony Coral; Zooxanthellae
Fricke, H. W. and B. Knauer. 1986. Diversity and spatial pattern of coral communities in the Red Sea upper twilight zone. Oecologia 71:29-37. 1986 Java Primary Production; Stony Coral
Herndl, G. J. and B. Velimirov. 1986. Microheterotrophic utilization of mucus released by the Mediterranean coral Cladocora cespitosa. Marine Biology 90:363-369. 1986 Cuba; Iran Lab Study Microorganisms; Plankton; Primary Production
Jokiel, P. L. and J. I. Morrissey. 1986. Influence of size on primary production in the reef coral Pocillopora damicornis and the macroalga Acanthophora spicifera. Marine Biology 91:15-26. 1986 US Pacific & Hawaii Model Light; Primary Production; Stony Coral
Schlichter, D., H. W. Fricke, and W. Weber. 1986. Light harvesting by wavelength transformation in a symbiotic coral of the Red Sea twilight zone. Marine Biology 91:403-407. 1986 Primary Production; Zooxanthellae
Vareschi, E. and H. Fricke. 1986. Light responses of a scleractinian coral (Plerogyra sinuosa). Marine Biology 90:395-402. 1986 Primary Production; Stony Coral; Zooxanthellae
Adey, W. H. and R. S. Steneck. 1985. Highly productive eastern caribbean reefs: synergistic effects of biological, chemical, physical, and geological factors. Pages 163-187 1985 South & Central America; US Virgin Islands; Caribbean Algae; Nutrients; Primary Production; Seawater Flow; Skeletal Coral; Stony Coral; Surface & Groundwater Flow; Turf Algae; Water Depth & Sea Level
Carpenter, R. C. 1985. Relationships between primary production and irradiance in coral reef algal communities. Limnology and Oceanography 30:784-793. 1985 Algae; Light; Primary Production
Delesalle, B. 1985. Environmental survey of Mataiva Atoll, Tuamotu Archipelago, French Polynesia. Atoll Research Bulletin 1985 Plankton; Primary Production
Knap Anthony, H., C. Wyers Sheila, E. Dodge Richard, D. Sleeter Thomas, R. Frith Harold, S. RO BE RT SO N Smith, and B. Cook Clayton. 1985. Effects Of Chemically And Physically Dispersed Oil On The Brain Coral Diploria Strigosa (Dana) - A Summary Review. Pages 547-551 in [No source information available]. 1985 Review; Field Study & Monitoring; Lab Study Primary Production; Stony Coral; Zooxanthellae
Littler, M. M., D. S. Littler, S. M. Blair, and J. N. Norris. 1985. Deepest known plant life discovered on an uncharted seamount. Science 227:57-59. 1985 Light; Primary Production; Sediment
Moriarty, D. J. W., P. C. Pollard, and W. G. Hunt. 1985. Temporal and spatial variation in bacterial production in the water column over a coral reef. Marine Biology 85:285-292. 1985 Australia Microorganisms; Nutrients; Primary Production; Seagrasses
Moriarty, D. J. W., P. C. Pollard, W. G. Hunt, C. M. Moriarty, and T. J. Wassenberg. 1985. Productivity of bacteria and microalgae and the effect of grazing by holothurians in sediments on a coral reef flat. Marine Biology 85:293-300. 1985 Australia Algae; Echinoderms; Microorganisms; Primary Production; Sediment
Pastorok, R. A., G. R. Bilyard. 1985. Effects of sewage pollution on coral-reef communities. Marine Ecology Progress Series 21:175-189. 1985 Algae; Nutrients; Primary Production; Sediment
Walton, RA YM ON D, W. MA RT IN Williams, P. Wang Ming, and A. Roesner Larry. 1985. Coral Reef Modeling: Key Largo Case Study. Pages 2420-2438 in Coastal Zone: Proceedings of the Symposium on Coastal and Ocean Management. 1985 Florida Model; Index or Indicator; Decision Support Frameworks & Tools CO2; Nutrients; Primary Production
Atkinson, M. J. and R. W. Grigg. 1984. Model of a coral reef ecosystem - II. Gross and net benthic primary production at French Frigate Shoals, Hawaii. Coral Reefs 3:13-22. 1984 US Pacific & Hawaii Model Primary Production; Sediment
Barnes, D. J. and M. J. Devereux. 1984. Productivity and calcification on a coral reef: A survey using pH and oxygen electrode techniques. Journal of Experimental Marine Biology and Ecology 79:213-231. 1984 Calcium Carbonate Deposition; Primary Production
Chalker, B. E., T. Cox, and W. C. Dunlap. 1984. Seasonal changes in primary production and photoadaptation by the reef-building coral Acropora granulosa on the Great Barrier Reef. Pages 73-87 in Marine phytoplankton and productivity. Proc. symposium, Taormina, 1983. 1984 Australia Light; Plankton; Primary Production; Stony Coral
Davies, P. S. 1984. The role of zooxanthellae in the nutritional energy requirements of Pocillopora eydouxi. Coral Reefs 2:181-186. 1984 Primary Production; Stony Coral; Zooxanthellae
Dubinsky, Z., P. G. Falkowski, J. W. Porter, and L. Muscatine. 1984. Absorption and utilization of radiant energy by light-and shade- adapted colonies of the hermatypic coral Stylophora pistillata. Page 1227 in Proceedings of the Royal Society. 1984 CO2; Light; Primary Production
Grigg, R. W., J. J. Polovina, and M. J. Atkinson. 1984. Model of a coral reef ecosystem - III. Resource limitation, community regulation, fisheries yield and resource management. Coral Reefs 3:23-27. 1984 Field Study & Monitoring; Model; Decision Support Frameworks & Tools Fishing Sector; Nutrients; Primary Production; Resource Use Management; Special Use Permitting
Porter, J. W., L. Muscatine, Z. Dubinsky, and P. G. Falkowski. 1984. Primary production and photoadaptation in light- and shade-adapted colonies of the symbiotic coral, Stylophora pistillata. Proceedings of the Royal Society of London Series B 222:161-80. 1984 Primary Production
Rayner, R. F. and E. A. Drew. 1984. Nutrient concentrations and primary productivity at the Peros Banhos and Salomon atolls in the Chagos Archipelago. Estuarine Coastal and Shelf Science 18:121-132. 1984 Chagos Archipelago Nutrients; Primary Production
Rinkevich, B. and Y. Loya. 1984. Coral illumination through an optic glass-fiber: incorporation of 14C photosynthates. Marine Biology 80:15-Jul. 1984 Cuba CO2; Primary Production
Szmant-Froelich, A. and M. E. Q. Pilson. 1984. Effects of feeding frequency and symbiosis with zooxanthellae on nitrogen metabolism and respiration of the coral Astrangia danae. Marine Biology 81:153-162. 1984 Nutrients; Primary Production; Zooxanthellae
Theil, H. and H. Weikert. 1984. Biological oceanography of the red oceanic system. Deep Sea Research Part A, Oceanographic Research Papers 31:829-831. 1984 Indian Ocean; US East Coast (NC, SC, GA); Atlantic Ocean; India; Sudan Nutrients; Plankton; Primary Production; Sediment; Surface & Groundwater Flow
Vandermeulen John, H. and S. Gilfillan Edward. 1984. Petroleum Pollution, Corals And Mangroves. Marine Technology Society Journal 18:62-72. 1984 Global Lab Study Mangroves; Primary Production
Burris, J.E., J.W. Porter, and W.A. Laing. 1983. Effects of carbon dioxide concentration on coral photosynthesis. Marine Biology 75:113-16. 1983 CO2; Primary Production
Chalker, B. E., W. C. Dunlap, and J. K. Oliver. 1983. Bathymetric adaptations of reef-building corals at davies reef, great barrier reef, Australia. II. Light saturation curves for photosynthesis and respiration. Journal of Experimental Marine Biology and Ecology 73:37-56. 1983 Australia Lab Study Algae; Light; Primary Production; Stony Coral
Cook, C. B. and A. H. Knap. 1983. Effects of crude oil and chemical dispersant on photosynthesis in the brain coral Diploria strigosa. Marine Biology 78:21-27. 1983 Primary Production; Stony Coral
Entsch, B., R. G. Sim, and B. G. Hatcher. 1983. Indications from photosynthetic components that iron is a limiting nutrient in primary producers on coral reefs. Marine Biology 73:17-30. 1983 Australia Lab Study Algae; Nutrients; Octocoral; Primary Production; Sediment; Zooxanthellae
Jacques, T. G., N. Marshall, and M. E. Q. Pilson. 1983. Experimental ecology of the temperate scleractinian coral Astrangia danae - II. Effect of temperature, light intensity and symbiosis with zooxanthellae on metabolic rate and calcification. Marine Biology 76:135-148. 1983 Cuba Algae; Calcium Carbonate Deposition; Light; Primary Production; Stony Coral; Zooxanthellae
Murphy, R. C. and J. N. Kremer. 1983. Community metabolism of Clipperton Lagoon, a coral atoll in the eastern Pacific. Bulletin of Marine Science 33:152-164. 1983 US Pacific & Hawaii Primary Production
Sheppard, C. R. C., Z. D. Dinesen, and E. A. Drew. 1983. Taxonomy, ecology and physiology of the geographically restricted scleractinian species Ctenella chagius Matthai. Bulletin of Marine Science 33:905-918. 1983 US Pacific & Hawaii; Indian Ocean; Chagos Archipelago; India Primary Production; Stony Coral
Suchanek, T. H. 1983. Control of seagrass communities and sediment distribution by Callianassa ( Crustacea, Thalassinidea) bioturbation. Journal of Marine Research 41:281-298. 1983 US Virgin Islands Algae; Lobster, Crab, & Shrimp; Primary Production; Seagrasses; Sediment
Swart, P. K. 1983. Carbon and oxygen isotope fractionation in scleractinian corals: a review. Earth Science Reviews 19:51-80. 1983 Review; Model CO2; Primary Production; Stony Coral
Tytler, E. M., and P. S. Davies. 1983. A method of isolating clean and viable zooxanthellae by density gradient centrifugation. Limnology and Oceanography 28:1266-1268. 1983 Primary Production; Zooxanthellae
Webb, L. and J. C. Coll. 1983. Effects of alcyonarian coral terpenes on scleractinian coral photosynthesis and respiration. Toxicon 21:485-488. 1983 Octocoral; Primary Production; Stony Coral
Wilkinson, C. R. 1983. Net primary productivity in coral reef sponges. Science 219:410-412. 1983 Australia Cyanobacteria; Microorganisms; Primary Production; Sponges
Barnes, D. J. 1982. Light response curve for calcification in the staghorn coral, Acropora acuminata. Comparative Biochemistry and Physiology Part A 73:41-45. 1982 Cuba Primary Production; Stony Coral
Bay, D. 1982. (In situ study of the metabolism of three infralittoral benthic communities of the Aqaba Gulf- Red Sea, Halophila stipulacea). [Etude in situ du metabolisme de trois communautes benthiques infralittorales du Golfe d'Aqaba-Mer Rouge.]. Comptes Rendus des Seances - Academie des Sciences, Serie III 294:463-466. 1982 Primary Production; Seagrasses
Clayton Jr., W. S. and H. R. Lasker. 1982. Effects of light and dark treatments on feeding by the reef coral Pocillopora damicornis (Linnaeus). Journal of Experimental Marine Biology and Ecology 63:269-279. 1982 Plankton; Primary Production; Stony Coral; Zooxanthellae
Cummings, C. E. and H. B. McCarty. 1982. Stable carbon isotope ratios in Astrangia danae: evidence for algal modification of carbon pools used in calcification. Geochimica et Cosmochimica Acta 46:1125-1129. 1982 Model Primary Production; Stony Coral; Zooxanthellae
Epstein, S. A. and G. M. Friedman. 1982. Processes controlling precipitation of carbonate cement and dissolution of silica in reef and near-reef settings. Sedimentary Geology 33:157-171. 1982 Field Study & Monitoring Algae; Calcium Carbonate Deposition; CO2; Primary Production; Sediment
Hawkins, C. M. and J. B. Lewis. 1982. Benthic primary production on a fringing coral reef in barbados, West Indies. Aquatic Botany 12:355-363. 1982 Algae; Plankton; Primary Production; Seagrasses
Hawkins, C. M. and J. B. Lewis. 1982. Ecological energetics of the tropical sea urchin Diadema antillarum Philippi in Barbados, West Indies. Estuarine Coastal and Shelf Science 15:645-669. 1982 Algae; Primary Production; Sea Urchins; Sediment
Ikeda, T., J. H. Carleton, A. W. Mitchell, and P. Dixon. 1982. Ammonia and phosphate excretion by zooplankton from the inshore waters of the Great Barrier Reef. II. Their in situ contributions to nutrient regeneration. Australian Journal of Marine and Freshwater Research 33:683-698. 1982 Australia Nutrients; Plankton; Primary Production
Saks, N. M. 1982. Primary production and release of assimilated carbon by Chlamydomonas provasolii in culture. Marine Biology 70:205-208. 1982 Algae; Primary Production
Chalker, B. E. 1981. Simulating light-saturation curves for photosynthesis and calcification by reef-building corals. Marine Biology 63:135-141. 1981 US Pacific & Hawaii; US East Coast (NC, SC, GA) Rate functions Primary Production; Stony Coral
Cherbadzhi, I. I. and M. V. Propp. 1981. Comparative characteristics of production indices of corals and periphyton on artificial and natural substrates. Soviet Journal of Marine Biology 7:238-242. 1981 Index or Indicator Primary Production; Skeletal Coral; Substrate
Fankboner, P. V. and R. G. B. Reid. 1981. Mass expulsion of zooxanthellae by heat-stressed reef corals: a source of food for giant clams? Experientia 37:251-252. 1981 Plankton; Primary Production; Zooxanthellae
Leletkin, V. A., and V. I. Zvalinsky. 1981. Photosynthesis of coral zooxanthellae from different depths. Pages 33-7 in Proceedings of the 4th Int Coral Reef Sym. 1981 Primary Production; Zooxanthellae
Osmond, C. B. 1981. Photorespiration and photoinhibition. Biochimica et. Biophysica Acta 639:77-98. 1981 Primary Production
Propp, M. V. 1981. Release and uptake of ammonium, nitrate, and orthophosphate by some corals. Soviet Journal of Marine Biology 7:198-204. 1981 Octocoral; Primary Production; Zooxanthellae
Rogers, C. S. and N. H. Salesky. 1981. Productivity of Acropora palmata (Lamarck), macroscopic algae, and algal turf from Tague Bay Reef, St. Croix, U.S. Virgin Islands. Journal of Experimental Marine Biology and Ecology 49:179-187. 1981 US Virgin Islands Algae; Primary Production; Skeletal Coral; Stony Coral
Sander, F. 1981. A preliminary assessment of the main causative mechanisms of the \island mass\" effect of Barbados". Marine Biology 64:199-205. 1981 Non-point Source Runoff; Nutrients; Primary Production; Salinity
Smith, S. V. and P. Kroopnick. 1981. Carbon-13 isotopic fractionation as a measure of aquatic metabolism. Nature 294:252-253. 1981 CO2; Primary Production
Vooren, C. M. 1981. Photosynthetic rates of benthic algae from the deep coral reef of Curacao. Aquatic Botany 10:143-159. 1981 Cuba Lab Study Algae; Primary Production; Substrate
Collins, N. 1980. Population ecology of Ephydra cinerea Jones (Diptera: Ephydridae), the only benthic metazoan of the Great Salt Lake, U.S.A. Hydrobiologia 68:99-112. 1980 Algae; Nutrients; Plankton; Primary Production; Salinity; Special Use Permitting; Substrate
Jacques, T. G. and M. E. Q. Pilson. 1980. Experimental ecology of the temperate scleractinian coral Astrangia danae I. Partition of respiration, photosynthesis and calcification between host and symbionts. Marine Biology 60:167-178. 1980 Cuba Calcium Carbonate Deposition; CO2; Primary Production; Stony Coral; Zooxanthellae
Titlyanov, E.A., Marina G. Shaposhnikova, and V.I. Zvalinskii. 1980. Photosynthesis and adaptation of corals to irradiance 1: Contents and native state of photosynthetic pigments in symbiotic. Photosynthetica 14:413-21. 1980 Light; Primary Production
Kevin, K. M. and R. C. L. Hudson. 1979. The role of zooxanthellae in the hermatypic coral Plesiastrea urvillei (Milne Edwards and Haime) From cold waters. Journal of Experimental Marine Biology and Ecology 36:157-170. 1979 Light; Primary Production; Zooxanthellae
Levanon-Spanier, I., E. Padan, and Z. Reiss. 1979. Primary production in a desert-enclosed sea- the Gulf of Elat (Aqaba), Red Sea. Deep Sea Research Part A, Oceanographic Research Papers 26:673-685. 1979 Nutrients; Plankton; Primary Production
Rogers, C. S. 1979. The effect of shading on coral reef structure and function. Journal of Experimental Marine Biology and Ecology 41:269-288. 1979 Puerto Rico Algae; Dredging, Draining, & Filling; Primary Production; Sediment; Skeletal Coral; Stony Coral
Smith, D. F., N. C. Bulleid, R. Campbell, H. W. Higgins, F. Rowe, D. J. Tranter, and H. Tranter. 1979. Marine food-web analysis: An experimental study of demersal zooplankton using isotopically labelled prey species. Marine Biology 54:49-59. 1979 Cuba GIS & Maps Marine Worms; Plankton; Primary Production
Chalker, B. E. and D. L. Taylor. 1978. Rhythmic variations in calcification and photosynthesis associated with the coral Acropora cervicornis (Lamarck). Pages 179-189 in Proceedings of the Royal Society of London - Biological Sciences. 1978 Primary Production; Stony Coral
Erez, J. 1978. Vital effect on stable-isotope composition seen in foraminifera and coral skeletons. Nature 273:199-202. 1978 Algae; CO2; Plankton; Primary Production
Coles, S. L. and P. L. Jokiel. 1977. Effects of temperature on photosynthesis and respiration in hermatypic corals. Marine Biology 43:209-216. 1977 US Pacific & Hawaii; Marshall Islands Primary Production; Stony Coral
Gladfelter, Elizabeth H., and Rosemary K. Monahan. 1977. Primary production and calcium carbonate deposition rates in Acropora palmata from different positions in the reef. Pages 389-94 in Proceedings of the 3rd Int Coral Reef Sym. 1977 Calcium Carbonate Deposition; Primary Production; Stony Coral
Mergner, H. and A. Svoboda. 1977. Productivity and seasonal changes in selected reef areas in the Gulf of Aqaba (Red Sea). Helgoländer Wissenschaftliche Meeresuntersuchungen 30:383-399. 1977 Algae; Echinoderms; Molluscs; Octocoral; Primary Production; Sediment; Stony Coral; Zooxanthellae
Owen, R. M. 1977. An assessment of the environmental impact of mining on the continental shelf. Marine Mining 1:-85. 1977 Field Study & Monitoring Environmental Monitoring, Mapping, & Scientific Research; Finfish Harvest; Mining; Mining Policies; Primary Production; Sediment
Por, F. D., I. Dor, and A. Amir. 1977. The mangal of Sinai: Limits of an ecosystem. Helgoländer Wissenschaftliche Meeresuntersuchungen 30:295-314. 1977 Model Algae; Mangroves; Nutrients; Primary Production; Salinity; Sediment
Schmitz, K. and B. P. Kremer. 1977. Carbon fixation and analysis of assimilates in a coral-dinoflagellate symbiosis. Marine Biology 42:305-313. 1977 Cuba Calcium Carbonate Deposition; Primary Production; Stony Coral
Scott, B. D. and H. R. Jitts. 1977. Photosynthesis of phytoplankton and zooxanthellae on a coral reef. Marine Biology 41:307-315. 1977 Australia Light; Plankton; Primary Production; Zooxanthellae
Sebens, K. P. and K. DeRiemer. 1977. Diel cycles of expansion and contraction in coral reef anthozoans. Marine Biology 43:247-256. 1977 South & Central America; Caribbean Anemones & Zooanthids; Nutrients; Primary Production; Zooxanthellae
Sournia, A. 1976. Oxygen metabolism of a fringing reef in French polynesia. Helgoländer Wissenschaftliche Meeresuntersuchungen 28:401-410. 1976 Algae; Primary Production
Wethey, D. S. and J. W. Porter. 1976. Sun and shade differences in productivity of reef corals. Nature 262:281-282. 1976 Lab Study Algae; Energy Policy & Development; Primary Production; Stony Coral; Zooxanthellae
Barnes, D. J. and D. L. Taylor. 1973. In situ studies of calcification and photosynthetic carbon fixation in the coral Montastrea annularis. Helgoländer Wissenschaftliche Meeresuntersuchungen 24:284-291. 1973 CO2; Primary Production; Stony Coral
Drew, E. A. 1973. The biology and physiology of alga-invertebrate symbioses. III. In situ measurements of photosynthesis and calcification in some hermatypic corals. Journal of Experimental Marine Biology and Ecology 13:165-179. 1973 South & Central America; Australia; Caribbean Hydrocoral; Primary Production; Stony Coral
Taylor, D. L. 1973. Symbiotic pathways of carbon in coral reef ecosystems - Present status and future prospects. Helgoländer Wissenschaftliche Meeresuntersuchungen 24:276-283. 1973 Primary Production
Wells, J. M., A. H. Wells, and J. G. VanDerwalker. 1973. In situ studies of metabolism in benthic reef communities. Helgoländer Wissenschaftliche Meeresuntersuchungen 24:78-81. 1973 Florida Primary Production; Stony Coral; Zooxanthellae
Gundersen, K. and P. Bienfang. 1972. Thermal Pollution: Use Of Deep, Cold, Nutrient Rich Sea Water For Power Plant Cooling And Subsequent Aquaculture In Hawaii [Marine Pollution And Sea Life]. Pages 513-516 FISHING NEWS. 1972 US Pacific & Hawaii Aquaculture; Beaches & Nature Parks; Discharges; Finfish Harvest; Light; Natural Gas & Electric Power; Nutrients; Primary Production; Surface & Groundwater Flow; Waterborne Discharges
Vandermeulen, J. H., N. D. Davis, and L. Muscatine. 1972. The effect of inhibitors of photosynthesis on zooxanthellae in corals and other marine invertebrates. Marine Biology 16:185-191. 1972 Decision Support Frameworks & Tools Primary Production; Stony Coral; Zooxanthellae
Qasim, S. Z. and P. M. A. Bhattathiri. 1971. Primary production of a seagrass bed on Kavaratti Atoll (Laccadives). Hydrobiologia 38:29-38. 1971 Primary Production; Seagrasses
Thompson, G. and H. D. Livingston. 1970. Strontium and uranium concentrations in aragonite precipitated by some modern corals. Earth and Planetary Science Letters 8:439-442. 1970 Lab Study Calcium Carbonate Deposition; Primary Production; Stony Coral; Zooxanthellae
Peres, J. M. and J. Picard. 1969. Reflexions sur la structure trophique des edifices recifaux. Marine Biology 3:227-232. 1969 Madagascar Algae; Fish; Plankton; Primary Production
Wainwright, S. A. 1967. Diurnal activity of hermatypic gorgonians. Nature 216:1041. 1967 South & Central America; Caribbean Lab Study Octocoral; Primary Production
Barnes, D.J., and B.E. Chalker. Calcification and photosynthesis in reef-building corals and algae. Pages 109-32 in Z, editor. Coral Reefs: Ecosystems of the World Vol 25. Algae; Primary Production; Stony Coral
Becker, E. L., E. E. Cordes, S. A. Macko, and C. R. Fisher. Importance of seep primary production to Lophelia pertusa and associated fauna in the Gulf of Mexico. Deep-Sea Research Part I: Oceanographic Research Papers South & Central America; Mexico Lobster, Crab, & Shrimp; Marine Worms; Nutrients; Primary Production; Snails & Conch
Erickson, K. L., S. A. Macko, and C. L. Van Dover. Evidence for a chemoautotrophically based food web at inactive hydrothermal vents (Manus Basin). Deep-Sea Research Part II: Topical Studies in Oceanography US Pacific & Hawaii; Papua New Guinea Nutrients; Primary Production; Sponges
Fujimura, H., T. Higuchi, K. Shiroma, T. Arakaki, A. M. Hamdun, Y. Nakano, and T. Oomori. Continuous-flow complete-mixing system for assessing the effects of environmental factors on colony-level coral metabolism. Journal of Biochemical and Biophysical Methods Model Primary Production; Stony Coral

Management Options

Management Option Description Sources Database Topics
Forestry Policy: Forestry Streamside Management Areas There are often surface waters, such as streams and lakes, within forestry areas that require special protection. This management option involves establishing and maintaining management areas (35 to 50 feet) around these surface waters to buffer against changes in temperature, increases in sediments and nutrients, and to provide bank stability. Canopy species in these areas also provide woody debris needed for instream channel structure and aquatic species habitat. Environmental Protection Agency Office of Water. 1993. Guidance Specifying Management Measures For Sources Of Nonpoint Pollution In Coastal Waters. EPA/840/B-92/002, US EPA, Washington, DC.

Natural Resources Conservation Service. 2011. National Handbook of Conservation Practices. U.S. Department of Agriculture.

Agriculture, Aquaculture, & Forestry Policies; Carbon Storage & Cycling; Civil Engineering & Construction; Construction Codes & Projects; Deforestation & Devegetation; Discharges; Ditching & Soil Disturbance; Food & Raw Materials; Forestry; Impervious Surfaces; Infrastructural Policies; Landscape Changes; Landscape Conservation & Restoration; Landuse Management; Non-point Source Runoff; Point & Mobile Source Controls; Primary Production; Sediment; Surface & Groundwater Flow; Waterborne Discharges; Wood, Plastics, & Chemical Products
Monitor & Research: Research and Monitor Wetlands This management option involves monitoring and research of mangroves, both for biotic and abiotic factors. Some biotic factors include disease, species, invasive species, abundance, age and leaf litter. Important abiotic factors include sedimentation rates, types and causes of turbidity, and soil chemistry. The activity would document changes to the extent of mangrove vegetation by using historical aerial photography and other records. Wetland nutrient and contaminant processing productivity depends on maintaining a balance and not exceeding thresholds. There remain many unknowns in wetland restoration as to optimal capacity and how to achieve this. NOAA Marine Sanctuary Program. 2007. Florida Keys National Marine Sanctuary revised management plan. National Ocean Service, Key West, FL.

Biological Monitoring & Restoration; Biological Monitoring, Mapping, & Scientific Research; Carbon Storage & Cycling; Chemical Variables; Climate Regulation; Complex Habitat & Resources; Deforestation & Devegetation; Discharges; Ecosystem Monitoring & Restoration; Educational & Research Opportunities; Environmental Monitoring & Restoration; Environmental Monitoring, Mapping, & Scientific Research; Invasive Species; Mangroves; Nutrient & Contaminant Processing; Nutrients; Physical & Chemical Water Quality Criteria; Physical Variables; Primary Production; Regulating Services; Scientific Research; Seawater Flow; Sediment; Shoreline Protection; Substrate; Supporting Services; Surface & Groundwater Flow; Wetland & Reef Restoration; Wetlands
Monitor & Research: Biological Status and Trends Monitoring This activity produces long-term comprehensive information on sanctuary-wide status and trends of biological resources. Data that could be collected on coral reef communities includes but is not limited to species abundance and density, biodiversity, benthic cover, coral condition, growth, recruitment, predation, and grazing. Mangroves and seagrasses should also be monitored. With adequate baseline data, changes in community structure and biocriteria can be identified and restoration or protection efforts can be taken. NOAA Marine Sanctuary Program. 2007. Florida Keys National Marine Sanctuary revised management plan. National Ocean Service, Key West, FL.

Algae; Anemones & Zooanthids; Apex Fish Predators; Aquaculture; Aquarium Stock; Biochemical & Genetic Resources; Biocriteria; Biological Harvest; Biological Monitoring & Restoration; Biological Monitoring, Mapping, & Scientific Research; Bivalves; Calcareous Macroalgae; Contact Uses; Coral; Coralline Algae; Cyanobacteria; Decision Support; Echinoderms; Ecosystem Monitoring & Restoration; Finfish & Shellfish Stock; Fish; Fishing Sector; Food & Energy Policies; Hydrocoral; Invasive Species; Invertebrates; Large Herbivorous Fish; Lobster, Crab, & Shrimp; Mangroves; Marine Birds; Marine Products; Marine Vertebrates; Marine Worms; Microorganisms; Molluscs; Octocoral; Octopus & Squid; Ornamental Jewelry & Art; Pathogens; Pharmaceuticals & Cosmetics Sources; Physical Damage; Primary Production; Provisioning Services; Resource Use Management; Sea Turtles; Sea Urchins; Seagrasses; Seastars; Skeletal Coral; Small Herbivorous Fish; Snails & Conch; Sponges; Stony Coral; Tunicates; Wetlands; Whales & Dolphins
Stormwater BMPs: Sustained Reservoir Minimum Release of Minimum Baseflow to Sustain Aquatic Habitat In some regions, even high intensity rivers (e.g. Rio Loco, Puerto Rico) are seasonal, drying for long enough to kill aquatic vegetation. Creating a constant baseflow would help sustain aquatic life and ultimately help to process nutrients. High intensity rivers are already prone to extreme channel erosion from the high flow rates, this erosion is even greater without any benthic biota to hold sediment on the river bottom. Restricting the release of reservoir water to that required to maintain aquatic biota would reduce the intensity of flow, stabilize the river bottom, create habitat and naturally process nutrients that could potentially contribute to eutrophication out on the coral reef. Center for Watershed Protection. 2008. Guanica Bay watershed management plan.

Natural Resources Conservation Service. 2011. National Handbook of Conservation Practices. U.S. Department of Agriculture.

Algae; Biological Monitoring & Restoration; Climate; Dam Construction & Maintenance; Discharge Limitations; Discharges; Ditching & Soil Disturbance; Drinking Water Supply; Ecosystem Monitoring & Restoration; Hydrologic Management; Infrastructural Policies; Infrastructure; Land-Based Civil Engineering; Landscape Changes; Landuse Management; Nutrient & Contaminant Processing; Physical Variables; Point Source Discharges; Pressures; Primary Production; Reef Habitat; Reef Life; Regulating Services; Storms & Hurricanes; Stormwater Management; Surface & Groundwater Flow; Utilities; Waste Management; Water; Waterborne Discharges; Wetland & Reef Restoration; Wetlands
Stormwater BMPs: Biological Stormwater Retention/Detention This method attempts to reduce the negative impacts of stormwater runoff through implementation of natural structures that retain runoff water for further treatment or controlled release. These structures are typically characterized as retention ponds and incorporate natural vegetation such as grass. These ponds may be dry, or may drain into nearby wetlands. Natural Resources Conservation Service. 2011. National Handbook of Conservation Practices. U.S. Department of Agriculture.

Natural Resources Conservation Service. Dry Extended Detention Ponds. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Poresky, A., Clary, J., Strecker, E., and Earles, A. 2011. International Stormwater Best Management Practices (BMP) Database. Technical Summary: Volume Reduction. Geosyntec Consultants.

Applied Chemicals; Chemical Variables; City Planning; Civil Engineering & Construction; Discharge Limitations; Discharges; Hydrologic Management; Infrastructural Policies; Irrigation; Land-Based Civil Engineering; Landscape Changes; Landscape Conservation & Restoration; Landuse Management; Non-point Source Controls; Non-point Source Runoff; Nutrient & Contaminant Processing; Physical Variables; Point & Mobile Source Controls; Point Source Discharges; Primary Production; Sediment; Storms & Hurricanes; Stormwater Management; Substrate; Supporting Services; Surface & Groundwater Flow; Toxics; Utilities; Utility Policies; Waste Management; Waste Management Policies; Wastewater Discharge; Water; Waterborne Discharges
Stormwater BMPs: Biological Stormwater Filtration This method attempts to reduce the negative impacts of stormwater runoff through implementing engineering techniques that allow natural processes and plants to act as filters. Such techniques would include using grass parking and turf covered swales. Many of these techniques, such as reversed elevations for planted areas in parking lots, can demonstrate benefits both as natural filters and for the vegetation that are used since it eliminates the need to water them with irrigation systems. NOAA Marine Sanctuary Program. 2007. Florida Keys National Marine Sanctuary revised management plan. National Ocean Service, Key West, FL.

Natural Resources Conservation Service. 2011. National Handbook of Conservation Practices. U.S. Department of Agriculture.

Natural Resources Conservation Service. Basic Biofiltration Swale. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Bioretention System. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Constructed Wetland. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Filter Strips. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Reversed Elevations System for Parking Lots and Planting Areas. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Riparian Forest Buffer. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Roadway Landscape Treatment System. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Wet Biofiltration Swale. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Wet Pond Design. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Natural Resources Conservation Service. Wet Swale. Urban BMP's - Water Runoff Management Accessed 3/23/2011.

Water Environment Research Foundation, American Society of Civil Engineers, U.S. Environmental Protection Agency, Federal Highway Administration, American Public Works Association, editor. 2008. Overview of Performance by BMP Category and Common Pollutant Type. International Stormwater Best Management Practices (BMP) Database [1999-2008].

Leisenring, M., Clary, J., Stephenson, J., and Hobson, P. 2010. International Stormwater Best Management Practices (BMP) Database Pollutant Category Summary: Nutrients. Geosyntec Consultants, Inc.

Applied Chemicals; Building & Home Construction; Chemical Variables; City Planning; Civil Engineering & Construction; Climate; Construction Codes & Projects; Deforestation & Devegetation; Discharge Limitations; Discharges; Ditching & Soil Disturbance; Fertilizer & Pesticide Use; Golf Course Operations; Impervious Surfaces; Infrastructure; Irrigation; Land-Based Civil Engineering; Landscape Changes; Landscape Conservation & Restoration; Landscaping & Household Services; Landuse Management; Non-point Source Controls; Non-point Source Runoff; Nutrient & Contaminant Processing; Physical Variables; Point & Mobile Source Controls; Point Source Discharges; Primary Production; Road Construction & Maintenance; Sediment; Storms & Hurricanes; Stormwater Management; Substrate; Supporting Services; Surface & Groundwater Flow; Toxics; Utilities; Waste Management; Waste Management Policies; Wastewater Discharge; Water; Waterborne Discharges
Water Quality Management: Treating Effluent Water Through Wetlands Additional treatment of sewage is often a necessary management option because secondary treatment alone leaves 20,000 times more nutrients in the water than the safe limit for corals. High concentrations of nutrients in the water leads to eutrophication, and coral reefs are more sensitive to nutrient enrichment than any other coastal system. Wetlands are extremely successful at reducing nitrogen levels in water. Using natural wetlands or "living machines" to perform this task can actually be more cost effective than further sewage treatment. Each successive wetland treatment cell of the series can provide incredible levels of denitrification, and thus protect corals from nutrient enrichment. Center for Watershed Protection. 2008. Guanica Bay watershed management plan.

Natural Resources Conservation Service. 2011. National Handbook of Conservation Practices. U.S. Department of Agriculture.

Natural Resources Conservation Service. 2003. Waste Treatment Lagoon. CODE 359. U.S. Depatrment of Agriculture.

Building & Home Construction; Chemical Variables; City Planning; Civil Engineering & Construction; Coastal Development; Coastal Engineering; Deforestation & Devegetation; Discharge Limitations; Discharges; Ditching & Soil Disturbance; Infrastructural Policies; Infrastructure; Land-Based Civil Engineering; Landscape Changes; Landscape Conservation & Restoration; Landuse Management; Mangroves; Nutrient & Contaminant Processing; Nutrients; Physical Variables; Point & Mobile Source Controls; Point Source Discharges; Primary Production; Security & Public Administration Policies; Sewage Treatment; Supporting Services; Surface & Groundwater Flow; Toxics; Utilities; Utility Policies; Waste Management; Waste Management Policies; Wastewater Discharge; Waterborne Discharges; Wetlands
Waterway Management: Stream Bank Riparian Plantings Planting native vegetation and trees in riparian zones helps to reduce erosion within channels. Such vegetation helps anchor the soil and sediment in place. Planting in riparian zones goes in hand with Remove Previous Canal and Irrigation Infrastructure (#274). This management option can be exercised in streams, canals used for boat passage, stormwater drainage ditches, or in agricultural irrigation channels. Center for Watershed Protection. 2008. Guanica Bay watershed management plan.

Natural Resources Conservation Service. 2011. National Handbook of Conservation Practices. U.S. Department of Agriculture.

Agriculture; Agriculture, Aquaculture, & Forestry Policies; Boat Movement; Boating Activities; Carbon Storage & Cycling; City Planning; Civil Engineering & Construction; Coastal Development; Construction Codes & Projects; Deforestation & Devegetation; Discharge Limitations; Discharges; Ditching & Soil Disturbance; Ecosystem Monitoring & Restoration; Food & Energy Policies; Forestry; Hydrologic Management; Infrastructural Policies; Infrastructure; Irrigation; Landscape Changes; Landscape Conservation & Restoration; Landuse Management; Nutrient & Contaminant Processing; Primary Production; Provisioning Services; Sediment; Stormwater Management; Supporting Services; Surface & Groundwater Flow; Transportation; Utilities; Water; Water Resources; Water Transportation; Waterborne Discharges
Waterway Management: Starting slower releases for longer durations from high-intensity rivers in coastal watershed and other methods of reducing sediment transport Slower releases with longer durations would be an advantage to short, intense releases. This is because current short, high intensity releases from rivers that are in the coastal watershed (like Rio Loco into Lagos Loco and Lucchetti) contributes to additional channel erosion and increase of suspending sediments in the water. Center for Watershed Protection. 2008. Guanica Bay watershed management plan.

Agriculture, Aquaculture, & Forestry Policies; Discharge Limitations; Discharges; Drinking Water Supply; Hydrologic Management; Infrastructure; Irrigation; Light; Point Source Discharges; Pressures; Primary Production; Water; Waterborne Discharges

Laws

Legal Citation Purpose of Law Management Organization Database Topics
Air Pollution Control, 62-204 Florida Administrative Code (1996). 62-204.100 Purpose and Scope. (1) This chapter establishes maximum allowable levels of pollutants in the ambient air, or ambient air quality standards, necessary to protect human health and public welfare. This chapter also establishes maximum allowable increases in ambient concentrations for subject pollutants to prevent significant deterioration of air quality in areas where ambient air quality standards are being met. It further specifies approved air quality monitoring and modeling methods. (2) In addition, this chapter designates all areas of the state as attainment, nonattainment, or unclassifiable with respect to each pollutant for which ambient air quality standards have been adopted; further designates certain attainment and unclassifiable areas of the state as air quality maintenance areas for particular pollutants; classifies all areas of the state as Class I, Class II, or Class III for determining which set of prevention of significant deterioration (PSD) increments apply; and designates all attainment and unclassifiable areas of the state as one or more PSD areas for determining which pollutant-specific PSD baseline dates apply. This chapter also sets forth procedures for redesignating and reclassifying areas as above. (3) The Department of Environmental Protection adopts this chapter to identify the Florida State Implementation Plan (SIP) required by the U.S. Environmental Protection Agency pursuant to 40 C.F.R. Part 51; to set forth the public notice and hearing requirements that the Department will adhere to for making SIP revisions; and to set forth the definitions, criteria, and procedures that the Department will use to review a federal agency�s general conformity determination, made pursuant to 40 C.F.R. Part 51, Subpart W; and to adopt by reference an interagency memorandum of agreement that the Department will comply with to review any transportation conformity determination, made pursuant to 40 C.F.R. Part 51, Subpart T. The provisions to 40 C.F.R. 51.853 require that a federal agency make a general conformity determination for any federal agency action in a nonattainment or maintenance area, to ensure that such action is consistent with the SIP and that such federal conformity determination be reviewed by the affected state. The provisions of 40 C.F.R. 51.394 require that a transportation conformity determination be made for the adoption, acceptance, approval, or support of certain transportation plans, transportation improvement programs, and transportation projects in nonattainment and maintenance areas for transportation-related criteria pollutants to ensure that such actions are consistent with the SIP. (4) Finally, this chapter adopts and incorporates by reference federal air pollution control regulations which are referenced in whole or in part throughout the Department�s air pollution control rules.

Application to Coral Reefs:By reducing emmissions to air, particularly carbon dioxide, the pH of ocean waters will not be reduced and that is a direct benefit to coral reefs, since a reduction in pH is believed to be detrimental to corals.

Legislative Actions:The Chapter designates all areas of the state as attainment, nonattainment, or unclassified with respect to each pollutant for which ambient air quality standards have benn adopted.

Comments:This chapter establishes maximum allowable levels of pollutants in the ambient air, or ambient air quality standards, necessary to protect human health and public welfare. This chapter also establishes maximum allowable increases in ambient concentrations for subject pollutants to prevent significant deterioration of air quality in areas where ambient air quality standards are being met. It further specifies approved air quality monitoring and modeling methods. 		Florida State Department of Environmental Protection

Jurisdiction:
 Atmospheric Emissions; Calcium Carbonate Deposition; Carbon Storage & Cycling; Chemical Use Regulations; CO2; Commercial Fishing Boats; Cruise Ships; Energy Policy & Development; Greenhouse Gas Emissions; Land & Air Transportation; Natural Gas & Electric Power; Non-Greenhouse Gas Emissions; Nutrients; Ocean Acidity; Oil & Gas Tankers; Point & Mobile Source Controls; Primary Production; Resource Use Management; Transportation Policies; Wetlands; Wood, Plastics, & Chemical Products

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